Last code update: Feb 8, 202s4

User Inputs

source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/Combined_NonLinear Code/sALS high islet1
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/Combined_NonLinear Code/sALS high islet1

drug: FALSE
drug kept: None
line kept: 6GNGiCTR, 5NWTiCTR, 0YX7iCTR, 3DE3iALS, 8RBNiALS, 6WKViALS

multiple_experiments: TRUE
multiple_plates <- FALSE

compare_cellline <- FALSE
compare_class <- TRUE
compare_drug <-FALSE

reference conditions:

## Removing Hours that only appears in one experiment
## 
## 
## | Hour| count|
## |----:|-----:|
## |  204|     1|
## 
## 
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |AALS-Set10 |NA    |0YX7iCTR |    23366|      874|
## |AALS-Set11 |NA    |3DE3iALS |     7604|     1574|
## |AALS-Set11 |NA    |5NWTiCTR |     8252|     1274|
## |AALS-Set12 |NA    |3DE3iALS |    16613|     3247|
## |AALS-Set12 |NA    |6GNGiCTR |    17629|     1822|
## |AALS-Set13 |NA    |3DE3iALS |    53024|     6685|
## |AALS-Set13 |NA    |8RBNiALS |     4655|     1965|
## |AALS-Set18 |NA    |6GNGiCTR |    25922|     2562|
## |AALS-Set18 |NA    |8RBNiALS |    51463|     1775|
## |AALS-Set20 |NA    |6WKViALS |    71775|     8570|
## |AALS-Set20 |NA    |8RBNiALS |    64278|    13311|
## |AALS-Set21 |NA    |3DE3iALS |    31653|     5297|
## |AALS-Set21 |NA    |5NWTiCTR |    44204|     2411|
## |AALS-Set21 |NA    |6GNGiCTR |    13651|     3793|
## |AALS-Set21 |NA    |6WKViALS |    49171|     1404|
## |AALS-Set22 |NA    |0YX7iCTR |    23371|     1133|
## |AALS-Set22 |NA    |6WKViALS |    75802|     1622|
## |AALS-Set22 |NA    |8RBNiALS |    15899|     1295|
## |AALS-Set25 |NA    |0YX7iCTR |    38004|     2032|
## |AALS-Set25 |NA    |6WKViALS |    17813|     1667|
## |AALS-Set26 |NA    |0YX7iCTR |    24926|      780|
## |AALS-Set26 |NA    |8RBNiALS |    12527|     2346|
## |AALS-Set29 |NA    |8RBNiALS |     7598|      422|
## |AALS-Set33 |NA    |0YX7iCTR |    15281|      885|
## |AALS-Set34 |NA    |0YX7iCTR |     1876|      112|
## |AALS-Set35 |NA    |0YX7iCTR |     2536|       88|
## |AALS-Set41 |NA    |0YX7iCTR |     2920|      118|
## |AALS-Set44 |NA    |0YX7iCTR |     7678|      957|
## |AALS-Set5  |NA    |5NWTiCTR |    30872|     2370|
## |AALS-Set5  |NA    |6WKViALS |    27719|     8342|
## |AALS-Set8  |NA    |3DE3iALS |    53189|     1116|
## |AALS-Set8  |NA    |5NWTiCTR |    44796|     1733|
## 
## 
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |AALS-Set10 |NA    |0YX7iCTR |1         |0    |     2298|       69|
## |AALS-Set10 |NA    |0YX7iCTR |2         |24   |     2482|       74|
## |AALS-Set10 |NA    |0YX7iCTR |3         |48   |     2668|       98|
## |AALS-Set10 |NA    |0YX7iCTR |4         |72   |     2804|       86|
## |AALS-Set10 |NA    |0YX7iCTR |5         |96   |     2983|       78|
## |AALS-Set10 |NA    |0YX7iCTR |6         |120  |     2826|       84|
## |AALS-Set10 |NA    |0YX7iCTR |7         |144  |     2557|      128|
## |AALS-Set10 |NA    |0YX7iCTR |8         |168  |     2635|       93|
## |AALS-Set10 |NA    |0YX7iCTR |9         |192  |     2113|      164|
## |AALS-Set11 |NA    |3DE3iALS |1         |0    |      955|       44|
## |AALS-Set11 |NA    |3DE3iALS |2         |24   |      988|       56|
## |AALS-Set11 |NA    |3DE3iALS |3         |48   |      928|       89|
## |AALS-Set11 |NA    |3DE3iALS |4         |72   |      923|      110|
## |AALS-Set11 |NA    |3DE3iALS |5         |96   |      769|      175|
## |AALS-Set11 |NA    |3DE3iALS |6         |120  |      759|      259|
## |AALS-Set11 |NA    |3DE3iALS |7         |144  |      704|      365|
## |AALS-Set11 |NA    |3DE3iALS |8         |168  |      852|      217|
## |AALS-Set11 |NA    |3DE3iALS |9         |192  |      726|      259|
## |AALS-Set11 |NA    |5NWTiCTR |1         |0    |      529|       53|
## |AALS-Set11 |NA    |5NWTiCTR |2         |24   |      727|       61|
## |AALS-Set11 |NA    |5NWTiCTR |3         |48   |      885|      133|
## |AALS-Set11 |NA    |5NWTiCTR |4         |72   |      850|      105|
## |AALS-Set11 |NA    |5NWTiCTR |5         |96   |     1049|      157|
## |AALS-Set11 |NA    |5NWTiCTR |6         |120  |     1031|      224|
## |AALS-Set11 |NA    |5NWTiCTR |7         |144  |     1014|      257|
## |AALS-Set11 |NA    |5NWTiCTR |8         |168  |      952|      148|
## |AALS-Set11 |NA    |5NWTiCTR |9         |192  |     1215|      136|
## |AALS-Set12 |NA    |3DE3iALS |1         |0    |     2270|       78|
## |AALS-Set12 |NA    |3DE3iALS |2         |24   |     2491|      112|
## |AALS-Set12 |NA    |3DE3iALS |3         |48   |     2569|      130|
## |AALS-Set12 |NA    |3DE3iALS |4         |72   |     1774|      240|
## |AALS-Set12 |NA    |3DE3iALS |5         |96   |     1764|      371|
## |AALS-Set12 |NA    |3DE3iALS |6         |120  |     1658|      552|
## |AALS-Set12 |NA    |3DE3iALS |7         |144  |     1837|      483|
## |AALS-Set12 |NA    |3DE3iALS |8         |168  |     1124|      612|
## |AALS-Set12 |NA    |3DE3iALS |9         |192  |     1126|      669|
## |AALS-Set12 |NA    |6GNGiCTR |1         |0    |     2234|      105|
## |AALS-Set12 |NA    |6GNGiCTR |2         |24   |     2160|      104|
## |AALS-Set12 |NA    |6GNGiCTR |3         |48   |     2349|       88|
## |AALS-Set12 |NA    |6GNGiCTR |4         |72   |     1621|      166|
## |AALS-Set12 |NA    |6GNGiCTR |5         |96   |     1788|      183|
## |AALS-Set12 |NA    |6GNGiCTR |6         |120  |     1822|      292|
## |AALS-Set12 |NA    |6GNGiCTR |7         |144  |     2224|      173|
## |AALS-Set12 |NA    |6GNGiCTR |8         |168  |     1673|      322|
## |AALS-Set12 |NA    |6GNGiCTR |9         |192  |     1758|      389|
## |AALS-Set13 |NA    |3DE3iALS |1         |0    |     6248|      341|
## |AALS-Set13 |NA    |3DE3iALS |2         |24   |     6441|      409|
## |AALS-Set13 |NA    |3DE3iALS |3         |48   |     7019|      560|
## |AALS-Set13 |NA    |3DE3iALS |4         |72   |     7223|      576|
## |AALS-Set13 |NA    |3DE3iALS |5         |96   |     6700|      976|
## |AALS-Set13 |NA    |3DE3iALS |6         |120  |     6730|     1030|
## |AALS-Set13 |NA    |3DE3iALS |7         |144  |     6635|     1217|
## |AALS-Set13 |NA    |3DE3iALS |8         |168  |     6028|     1576|
## |AALS-Set13 |NA    |8RBNiALS |1         |0    |      900|      174|
## |AALS-Set13 |NA    |8RBNiALS |2         |24   |      766|      234|
## |AALS-Set13 |NA    |8RBNiALS |3         |48   |      651|      275|
## |AALS-Set13 |NA    |8RBNiALS |4         |72   |      581|      261|
## |AALS-Set13 |NA    |8RBNiALS |5         |96   |      472|      271|
## |AALS-Set13 |NA    |8RBNiALS |6         |120  |      461|      248|
## |AALS-Set13 |NA    |8RBNiALS |7         |144  |      424|      257|
## |AALS-Set13 |NA    |8RBNiALS |8         |168  |      400|      245|
## |AALS-Set18 |NA    |6GNGiCTR |1         |0    |     3108|      318|
## |AALS-Set18 |NA    |6GNGiCTR |2         |24   |     3111|      258|
## |AALS-Set18 |NA    |6GNGiCTR |3         |48   |     3195|      368|
## |AALS-Set18 |NA    |6GNGiCTR |4         |72   |     2888|      353|
## |AALS-Set18 |NA    |6GNGiCTR |5         |96   |     3357|      295|
## |AALS-Set18 |NA    |6GNGiCTR |6         |120  |     2604|      244|
## |AALS-Set18 |NA    |6GNGiCTR |7         |144  |     2353|      261|
## |AALS-Set18 |NA    |6GNGiCTR |8         |168  |     2606|      283|
## |AALS-Set18 |NA    |6GNGiCTR |9         |192  |     2700|      182|
## |AALS-Set18 |NA    |8RBNiALS |1         |0    |     5333|      271|
## |AALS-Set18 |NA    |8RBNiALS |2         |24   |     4960|      183|
## |AALS-Set18 |NA    |8RBNiALS |3         |48   |     6057|      240|
## |AALS-Set18 |NA    |8RBNiALS |4         |72   |     6978|      179|
## |AALS-Set18 |NA    |8RBNiALS |5         |96   |     7243|      178|
## |AALS-Set18 |NA    |8RBNiALS |6         |120  |     5660|      185|
## |AALS-Set18 |NA    |8RBNiALS |7         |144  |     5667|      184|
## |AALS-Set18 |NA    |8RBNiALS |8         |168  |     5378|      193|
## |AALS-Set18 |NA    |8RBNiALS |9         |192  |     4187|      162|
## |AALS-Set20 |NA    |6WKViALS |1         |0    |     7286|      693|
## |AALS-Set20 |NA    |6WKViALS |2         |24   |     8424|      801|
## |AALS-Set20 |NA    |6WKViALS |3         |48   |     8317|      812|
## |AALS-Set20 |NA    |6WKViALS |4         |72   |     8908|      967|
## |AALS-Set20 |NA    |6WKViALS |5         |96   |     9166|      896|
## |AALS-Set20 |NA    |6WKViALS |6         |120  |     9773|     1254|
## |AALS-Set20 |NA    |6WKViALS |7         |144  |     9896|     1551|
## |AALS-Set20 |NA    |6WKViALS |8         |168  |    10005|     1596|
## |AALS-Set20 |NA    |8RBNiALS |1         |0    |     7550|      934|
## |AALS-Set20 |NA    |8RBNiALS |2         |24   |     7983|     1009|
## |AALS-Set20 |NA    |8RBNiALS |3         |48   |     8462|     1272|
## |AALS-Set20 |NA    |8RBNiALS |4         |72   |     8752|     1528|
## |AALS-Set20 |NA    |8RBNiALS |5         |96   |     8083|     1869|
## |AALS-Set20 |NA    |8RBNiALS |6         |120  |     8171|     1909|
## |AALS-Set20 |NA    |8RBNiALS |7         |144  |     7859|     2211|
## |AALS-Set20 |NA    |8RBNiALS |8         |168  |     7418|     2579|
## |AALS-Set21 |NA    |3DE3iALS |1         |0    |     3398|      242|
## |AALS-Set21 |NA    |3DE3iALS |2         |24   |     3645|      271|
## |AALS-Set21 |NA    |3DE3iALS |3         |48   |     4049|      304|
## |AALS-Set21 |NA    |3DE3iALS |4         |72   |     3489|      290|
## |AALS-Set21 |NA    |3DE3iALS |5         |96   |     3641|      411|
## |AALS-Set21 |NA    |3DE3iALS |6         |120  |     3585|      530|
## |AALS-Set21 |NA    |3DE3iALS |7         |144  |     3391|      675|
## |AALS-Set21 |NA    |3DE3iALS |8         |168  |     2227|      802|
## |AALS-Set21 |NA    |3DE3iALS |9         |192  |     2197|      854|
## |AALS-Set21 |NA    |3DE3iALS |11        |216  |     2031|      918|
## |AALS-Set21 |NA    |5NWTiCTR |1         |0    |     4184|      108|
## |AALS-Set21 |NA    |5NWTiCTR |2         |24   |     4541|      126|
## |AALS-Set21 |NA    |5NWTiCTR |3         |48   |     4865|      131|
## |AALS-Set21 |NA    |5NWTiCTR |4         |72   |     4607|      137|
## |AALS-Set21 |NA    |5NWTiCTR |5         |96   |     4736|      183|
## |AALS-Set21 |NA    |5NWTiCTR |6         |120  |     4874|      223|
## |AALS-Set21 |NA    |5NWTiCTR |7         |144  |     4682|      272|
## |AALS-Set21 |NA    |5NWTiCTR |8         |168  |     3675|      407|
## |AALS-Set21 |NA    |5NWTiCTR |9         |192  |     4002|      425|
## |AALS-Set21 |NA    |5NWTiCTR |11        |216  |     4038|      399|
## |AALS-Set21 |NA    |6GNGiCTR |1         |0    |     1419|      178|
## |AALS-Set21 |NA    |6GNGiCTR |2         |24   |     1336|      226|
## |AALS-Set21 |NA    |6GNGiCTR |3         |48   |     1356|      323|
## |AALS-Set21 |NA    |6GNGiCTR |4         |72   |     1483|      290|
## |AALS-Set21 |NA    |6GNGiCTR |5         |96   |     1512|      358|
## |AALS-Set21 |NA    |6GNGiCTR |6         |120  |     1331|      460|
## |AALS-Set21 |NA    |6GNGiCTR |7         |144  |     1245|      522|
## |AALS-Set21 |NA    |6GNGiCTR |8         |168  |     1302|      511|
## |AALS-Set21 |NA    |6GNGiCTR |9         |192  |     1456|      485|
## |AALS-Set21 |NA    |6GNGiCTR |11        |216  |     1211|      440|
## |AALS-Set21 |NA    |6WKViALS |1         |0    |     3921|      130|
## |AALS-Set21 |NA    |6WKViALS |2         |24   |     4362|      133|
## |AALS-Set21 |NA    |6WKViALS |3         |48   |     4668|      141|
## |AALS-Set21 |NA    |6WKViALS |4         |72   |     5294|      139|
## |AALS-Set21 |NA    |6WKViALS |5         |96   |     5791|      124|
## |AALS-Set21 |NA    |6WKViALS |6         |120  |     5453|      141|
## |AALS-Set21 |NA    |6WKViALS |7         |144  |     5342|      173|
## |AALS-Set21 |NA    |6WKViALS |8         |168  |     4285|      181|
## |AALS-Set21 |NA    |6WKViALS |9         |192  |     5037|      121|
## |AALS-Set21 |NA    |6WKViALS |11        |216  |     5018|      121|
## |AALS-Set22 |NA    |0YX7iCTR |1         |0    |     2795|       55|
## |AALS-Set22 |NA    |0YX7iCTR |2         |24   |     3011|       56|
## |AALS-Set22 |NA    |0YX7iCTR |3         |48   |     2856|       89|
## |AALS-Set22 |NA    |0YX7iCTR |4         |72   |     2984|       88|
## |AALS-Set22 |NA    |0YX7iCTR |5         |96   |     2477|      108|
## |AALS-Set22 |NA    |0YX7iCTR |6         |120  |     2143|      162|
## |AALS-Set22 |NA    |0YX7iCTR |7         |144  |     1896|      158|
## |AALS-Set22 |NA    |0YX7iCTR |8         |168  |     1771|      174|
## |AALS-Set22 |NA    |0YX7iCTR |9         |192  |     1882|      117|
## |AALS-Set22 |NA    |0YX7iCTR |11        |216  |     1556|      126|
## |AALS-Set22 |NA    |6WKViALS |1         |0    |     9766|       78|
## |AALS-Set22 |NA    |6WKViALS |2         |24   |    10876|      114|
## |AALS-Set22 |NA    |6WKViALS |3         |48   |     9398|       97|
## |AALS-Set22 |NA    |6WKViALS |4         |72   |    10112|       97|
## |AALS-Set22 |NA    |6WKViALS |5         |96   |     7721|      107|
## |AALS-Set22 |NA    |6WKViALS |6         |120  |     6889|      143|
## |AALS-Set22 |NA    |6WKViALS |7         |144  |     6259|      211|
## |AALS-Set22 |NA    |6WKViALS |8         |168  |     4085|      271|
## |AALS-Set22 |NA    |6WKViALS |9         |192  |     4984|      221|
## |AALS-Set22 |NA    |6WKViALS |11        |216  |     5712|      283|
## |AALS-Set22 |NA    |8RBNiALS |1         |0    |     2138|       54|
## |AALS-Set22 |NA    |8RBNiALS |2         |24   |     2417|       42|
## |AALS-Set22 |NA    |8RBNiALS |3         |48   |     1917|       60|
## |AALS-Set22 |NA    |8RBNiALS |4         |72   |     2011|       72|
## |AALS-Set22 |NA    |8RBNiALS |5         |96   |     1740|       87|
## |AALS-Set22 |NA    |8RBNiALS |6         |120  |     1509|      128|
## |AALS-Set22 |NA    |8RBNiALS |7         |144  |     1390|      137|
## |AALS-Set22 |NA    |8RBNiALS |8         |168  |      690|      234|
## |AALS-Set22 |NA    |8RBNiALS |9         |192  |      925|      234|
## |AALS-Set22 |NA    |8RBNiALS |11        |216  |     1162|      247|
## |AALS-Set25 |NA    |0YX7iCTR |1         |0    |     4884|      205|
## |AALS-Set25 |NA    |0YX7iCTR |2         |24   |     4751|      177|
## |AALS-Set25 |NA    |0YX7iCTR |3         |48   |     3480|      154|
## |AALS-Set25 |NA    |0YX7iCTR |4         |72   |     3942|      197|
## |AALS-Set25 |NA    |0YX7iCTR |5         |96   |     3798|      149|
## |AALS-Set25 |NA    |0YX7iCTR |6         |120  |     4796|      150|
## |AALS-Set25 |NA    |0YX7iCTR |7         |144  |     3565|      170|
## |AALS-Set25 |NA    |0YX7iCTR |8         |168  |     3760|      186|
## |AALS-Set25 |NA    |0YX7iCTR |9         |192  |     2412|      200|
## |AALS-Set25 |NA    |0YX7iCTR |11        |216  |     2616|      444|
## |AALS-Set25 |NA    |6WKViALS |1         |0    |     1285|      157|
## |AALS-Set25 |NA    |6WKViALS |2         |24   |     1503|      204|
## |AALS-Set25 |NA    |6WKViALS |3         |48   |     1750|      186|
## |AALS-Set25 |NA    |6WKViALS |4         |72   |     1830|      224|
## |AALS-Set25 |NA    |6WKViALS |5         |96   |     2369|      121|
## |AALS-Set25 |NA    |6WKViALS |6         |120  |     2848|      106|
## |AALS-Set25 |NA    |6WKViALS |7         |144  |     1704|      123|
## |AALS-Set25 |NA    |6WKViALS |8         |168  |     1861|      141|
## |AALS-Set25 |NA    |6WKViALS |9         |192  |     1307|      165|
## |AALS-Set25 |NA    |6WKViALS |11        |216  |     1356|      240|
## |AALS-Set26 |NA    |0YX7iCTR |1         |0    |     2991|       57|
## |AALS-Set26 |NA    |0YX7iCTR |2         |24   |     3209|       49|
## |AALS-Set26 |NA    |0YX7iCTR |3         |48   |     3186|       45|
## |AALS-Set26 |NA    |0YX7iCTR |4         |72   |     3081|       60|
## |AALS-Set26 |NA    |0YX7iCTR |5         |96   |     3063|       67|
## |AALS-Set26 |NA    |0YX7iCTR |6         |120  |     2439|      119|
## |AALS-Set26 |NA    |0YX7iCTR |7         |144  |     2180|      156|
## |AALS-Set26 |NA    |0YX7iCTR |8         |168  |     2311|      112|
## |AALS-Set26 |NA    |0YX7iCTR |9         |192  |     2466|      115|
## |AALS-Set26 |NA    |8RBNiALS |1         |0    |     1620|       94|
## |AALS-Set26 |NA    |8RBNiALS |2         |24   |     1703|      121|
## |AALS-Set26 |NA    |8RBNiALS |3         |48   |     1672|      163|
## |AALS-Set26 |NA    |8RBNiALS |4         |72   |     1540|      172|
## |AALS-Set26 |NA    |8RBNiALS |5         |96   |     1573|      216|
## |AALS-Set26 |NA    |8RBNiALS |6         |120  |     1159|      371|
## |AALS-Set26 |NA    |8RBNiALS |7         |144  |     1047|      414|
## |AALS-Set26 |NA    |8RBNiALS |8         |168  |     1103|      423|
## |AALS-Set26 |NA    |8RBNiALS |9         |192  |     1110|      372|
## |AALS-Set29 |NA    |8RBNiALS |1         |0    |      993|       42|
## |AALS-Set29 |NA    |8RBNiALS |2         |24   |      974|       50|
## |AALS-Set29 |NA    |8RBNiALS |3         |48   |     1091|       59|
## |AALS-Set29 |NA    |8RBNiALS |6         |120  |      754|       72|
## |AALS-Set29 |NA    |8RBNiALS |7         |144  |      912|       48|
## |AALS-Set29 |NA    |8RBNiALS |8         |168  |      956|       38|
## |AALS-Set29 |NA    |8RBNiALS |9         |192  |      957|       60|
## |AALS-Set29 |NA    |8RBNiALS |11        |216  |      961|       53|
## |AALS-Set33 |NA    |0YX7iCTR |1         |0    |     2385|      109|
## |AALS-Set33 |NA    |0YX7iCTR |2         |24   |     2420|      106|
## |AALS-Set33 |NA    |0YX7iCTR |5         |96   |     2329|       94|
## |AALS-Set33 |NA    |0YX7iCTR |6         |120  |     2352|       77|
## |AALS-Set33 |NA    |0YX7iCTR |8         |168  |     2157|       97|
## |AALS-Set33 |NA    |0YX7iCTR |9         |192  |     1891|      149|
## |AALS-Set33 |NA    |0YX7iCTR |11        |216  |     1747|      253|
## |AALS-Set34 |NA    |0YX7iCTR |1         |0    |      415|       23|
## |AALS-Set34 |NA    |0YX7iCTR |5         |96   |      460|       33|
## |AALS-Set34 |NA    |0YX7iCTR |6         |120  |      456|       34|
## |AALS-Set34 |NA    |0YX7iCTR |8         |168  |      545|       22|
## |AALS-Set35 |NA    |0YX7iCTR |1         |0    |      446|        7|
## |AALS-Set35 |NA    |0YX7iCTR |2         |24   |      485|        7|
## |AALS-Set35 |NA    |0YX7iCTR |3         |48   |      437|        7|
## |AALS-Set35 |NA    |0YX7iCTR |4         |72   |      357|        9|
## |AALS-Set35 |NA    |0YX7iCTR |5         |96   |      296|        9|
## |AALS-Set35 |NA    |0YX7iCTR |6         |120  |      253|       12|
## |AALS-Set35 |NA    |0YX7iCTR |7         |144  |      162|       13|
## |AALS-Set35 |NA    |0YX7iCTR |8         |168  |      100|       24|
## |AALS-Set41 |NA    |0YX7iCTR |1         |0    |     1087|       10|
## |AALS-Set41 |NA    |0YX7iCTR |2         |24   |      584|       42|
## |AALS-Set41 |NA    |0YX7iCTR |4         |72   |      294|       39|
## |AALS-Set41 |NA    |0YX7iCTR |5         |96   |      322|       10|
## |AALS-Set41 |NA    |0YX7iCTR |8         |168  |      317|        8|
## |AALS-Set41 |NA    |0YX7iCTR |9         |192  |      316|        9|
## |AALS-Set44 |NA    |0YX7iCTR |1         |0    |      800|      291|
## |AALS-Set44 |NA    |0YX7iCTR |2         |24   |     1836|      117|
## |AALS-Set44 |NA    |0YX7iCTR |3         |48   |     1785|       88|
## |AALS-Set44 |NA    |0YX7iCTR |4         |72   |     1721|      116|
## |AALS-Set44 |NA    |0YX7iCTR |5         |96   |      803|      192|
## |AALS-Set44 |NA    |0YX7iCTR |8         |168  |      733|      153|
## |AALS-Set5  |NA    |5NWTiCTR |1         |0    |     3975|      272|
## |AALS-Set5  |NA    |5NWTiCTR |2         |24   |     4548|      341|
## |AALS-Set5  |NA    |5NWTiCTR |3         |48   |     4913|      348|
## |AALS-Set5  |NA    |5NWTiCTR |4         |72   |     5204|      249|
## |AALS-Set5  |NA    |5NWTiCTR |5         |96   |     4802|      270|
## |AALS-Set5  |NA    |5NWTiCTR |7         |144  |     3885|      391|
## |AALS-Set5  |NA    |5NWTiCTR |8         |168  |     3545|      499|
## |AALS-Set5  |NA    |6WKViALS |1         |0    |     4418|      654|
## |AALS-Set5  |NA    |6WKViALS |2         |24   |     4514|      895|
## |AALS-Set5  |NA    |6WKViALS |3         |48   |     4492|     1114|
## |AALS-Set5  |NA    |6WKViALS |4         |72   |     4327|     1023|
## |AALS-Set5  |NA    |6WKViALS |5         |96   |     4040|     1270|
## |AALS-Set5  |NA    |6WKViALS |7         |144  |     3311|     1483|
## |AALS-Set5  |NA    |6WKViALS |8         |168  |     2617|     1903|
## |AALS-Set8  |NA    |3DE3iALS |1         |0    |     5451|      106|
## |AALS-Set8  |NA    |3DE3iALS |2         |24   |     6226|       89|
## |AALS-Set8  |NA    |3DE3iALS |3         |48   |     6920|       79|
## |AALS-Set8  |NA    |3DE3iALS |4         |72   |     7180|      100|
## |AALS-Set8  |NA    |3DE3iALS |5         |96   |     7227|      124|
## |AALS-Set8  |NA    |3DE3iALS |6         |120  |     7069|      126|
## |AALS-Set8  |NA    |3DE3iALS |7         |144  |     6657|      179|
## |AALS-Set8  |NA    |3DE3iALS |8         |168  |     6459|      313|
## |AALS-Set8  |NA    |5NWTiCTR |1         |0    |     4396|      166|
## |AALS-Set8  |NA    |5NWTiCTR |2         |24   |     5031|      149|
## |AALS-Set8  |NA    |5NWTiCTR |3         |48   |     5879|      140|
## |AALS-Set8  |NA    |5NWTiCTR |4         |72   |     6021|      176|
## |AALS-Set8  |NA    |5NWTiCTR |5         |96   |     5972|      195|
## |AALS-Set8  |NA    |5NWTiCTR |6         |120  |     5856|      221|
## |AALS-Set8  |NA    |5NWTiCTR |7         |144  |     5873|      275|
## |AALS-Set8  |NA    |5NWTiCTR |8         |168  |     5768|      411|
## 
## 
## |Experiment |Plate |Class |Timepoint | sum_live| sum_dead|
## |:----------|:-----|:-----|:---------|--------:|--------:|
## |AALS-Set10 |NA    |0     |1         |     2298|       69|
## |AALS-Set10 |NA    |0     |2         |     2482|       74|
## |AALS-Set10 |NA    |0     |3         |     2668|       98|
## |AALS-Set10 |NA    |0     |4         |     2804|       86|
## |AALS-Set10 |NA    |0     |5         |     2983|       78|
## |AALS-Set10 |NA    |0     |6         |     2826|       84|
## |AALS-Set10 |NA    |0     |7         |     2557|      128|
## |AALS-Set10 |NA    |0     |8         |     2635|       93|
## |AALS-Set10 |NA    |0     |9         |     2113|      164|
## |AALS-Set11 |NA    |0     |1         |      529|       53|
## |AALS-Set11 |NA    |0     |2         |      727|       61|
## |AALS-Set11 |NA    |0     |3         |      885|      133|
## |AALS-Set11 |NA    |0     |4         |      850|      105|
## |AALS-Set11 |NA    |0     |5         |     1049|      157|
## |AALS-Set11 |NA    |0     |6         |     1031|      224|
## |AALS-Set11 |NA    |0     |7         |     1014|      257|
## |AALS-Set11 |NA    |0     |8         |      952|      148|
## |AALS-Set11 |NA    |0     |9         |     1215|      136|
## |AALS-Set11 |NA    |1     |1         |      955|       44|
## |AALS-Set11 |NA    |1     |2         |      988|       56|
## |AALS-Set11 |NA    |1     |3         |      928|       89|
## |AALS-Set11 |NA    |1     |4         |      923|      110|
## |AALS-Set11 |NA    |1     |5         |      769|      175|
## |AALS-Set11 |NA    |1     |6         |      759|      259|
## |AALS-Set11 |NA    |1     |7         |      704|      365|
## |AALS-Set11 |NA    |1     |8         |      852|      217|
## |AALS-Set11 |NA    |1     |9         |      726|      259|
## |AALS-Set12 |NA    |0     |1         |     2234|      105|
## |AALS-Set12 |NA    |0     |2         |     2160|      104|
## |AALS-Set12 |NA    |0     |3         |     2349|       88|
## |AALS-Set12 |NA    |0     |4         |     1621|      166|
## |AALS-Set12 |NA    |0     |5         |     1788|      183|
## |AALS-Set12 |NA    |0     |6         |     1822|      292|
## |AALS-Set12 |NA    |0     |7         |     2224|      173|
## |AALS-Set12 |NA    |0     |8         |     1673|      322|
## |AALS-Set12 |NA    |0     |9         |     1758|      389|
## |AALS-Set12 |NA    |1     |1         |     2270|       78|
## |AALS-Set12 |NA    |1     |2         |     2491|      112|
## |AALS-Set12 |NA    |1     |3         |     2569|      130|
## |AALS-Set12 |NA    |1     |4         |     1774|      240|
## |AALS-Set12 |NA    |1     |5         |     1764|      371|
## |AALS-Set12 |NA    |1     |6         |     1658|      552|
## |AALS-Set12 |NA    |1     |7         |     1837|      483|
## |AALS-Set12 |NA    |1     |8         |     1124|      612|
## |AALS-Set12 |NA    |1     |9         |     1126|      669|
## |AALS-Set13 |NA    |1     |1         |     7148|      515|
## |AALS-Set13 |NA    |1     |2         |     7207|      643|
## |AALS-Set13 |NA    |1     |3         |     7670|      835|
## |AALS-Set13 |NA    |1     |4         |     7804|      837|
## |AALS-Set13 |NA    |1     |5         |     7172|     1247|
## |AALS-Set13 |NA    |1     |6         |     7191|     1278|
## |AALS-Set13 |NA    |1     |7         |     7059|     1474|
## |AALS-Set13 |NA    |1     |8         |     6428|     1821|
## |AALS-Set18 |NA    |0     |1         |     3108|      318|
## |AALS-Set18 |NA    |0     |2         |     3111|      258|
## |AALS-Set18 |NA    |0     |3         |     3195|      368|
## |AALS-Set18 |NA    |0     |4         |     2888|      353|
## |AALS-Set18 |NA    |0     |5         |     3357|      295|
## |AALS-Set18 |NA    |0     |6         |     2604|      244|
## |AALS-Set18 |NA    |0     |7         |     2353|      261|
## |AALS-Set18 |NA    |0     |8         |     2606|      283|
## |AALS-Set18 |NA    |0     |9         |     2700|      182|
## |AALS-Set18 |NA    |1     |1         |     5333|      271|
## |AALS-Set18 |NA    |1     |2         |     4960|      183|
## |AALS-Set18 |NA    |1     |3         |     6057|      240|
## |AALS-Set18 |NA    |1     |4         |     6978|      179|
## |AALS-Set18 |NA    |1     |5         |     7243|      178|
## |AALS-Set18 |NA    |1     |6         |     5660|      185|
## |AALS-Set18 |NA    |1     |7         |     5667|      184|
## |AALS-Set18 |NA    |1     |8         |     5378|      193|
## |AALS-Set18 |NA    |1     |9         |     4187|      162|
## |AALS-Set20 |NA    |1     |1         |    14836|     1627|
## |AALS-Set20 |NA    |1     |2         |    16407|     1810|
## |AALS-Set20 |NA    |1     |3         |    16779|     2084|
## |AALS-Set20 |NA    |1     |4         |    17660|     2495|
## |AALS-Set20 |NA    |1     |5         |    17249|     2765|
## |AALS-Set20 |NA    |1     |6         |    17944|     3163|
## |AALS-Set20 |NA    |1     |7         |    17755|     3762|
## |AALS-Set20 |NA    |1     |8         |    17423|     4175|
## |AALS-Set21 |NA    |0     |1         |     5603|      286|
## |AALS-Set21 |NA    |0     |2         |     5877|      352|
## |AALS-Set21 |NA    |0     |3         |     6221|      454|
## |AALS-Set21 |NA    |0     |4         |     6090|      427|
## |AALS-Set21 |NA    |0     |5         |     6248|      541|
## |AALS-Set21 |NA    |0     |6         |     6205|      683|
## |AALS-Set21 |NA    |0     |7         |     5927|      794|
## |AALS-Set21 |NA    |0     |8         |     4977|      918|
## |AALS-Set21 |NA    |0     |9         |     5458|      910|
## |AALS-Set21 |NA    |0     |11        |     5249|      839|
## |AALS-Set21 |NA    |1     |1         |     7319|      372|
## |AALS-Set21 |NA    |1     |2         |     8007|      404|
## |AALS-Set21 |NA    |1     |3         |     8717|      445|
## |AALS-Set21 |NA    |1     |4         |     8783|      429|
## |AALS-Set21 |NA    |1     |5         |     9432|      535|
## |AALS-Set21 |NA    |1     |6         |     9038|      671|
## |AALS-Set21 |NA    |1     |7         |     8733|      848|
## |AALS-Set21 |NA    |1     |8         |     6512|      983|
## |AALS-Set21 |NA    |1     |9         |     7234|      975|
## |AALS-Set21 |NA    |1     |11        |     7049|     1039|
## |AALS-Set22 |NA    |0     |1         |     2795|       55|
## |AALS-Set22 |NA    |0     |2         |     3011|       56|
## |AALS-Set22 |NA    |0     |3         |     2856|       89|
## |AALS-Set22 |NA    |0     |4         |     2984|       88|
## |AALS-Set22 |NA    |0     |5         |     2477|      108|
## |AALS-Set22 |NA    |0     |6         |     2143|      162|
## |AALS-Set22 |NA    |0     |7         |     1896|      158|
## |AALS-Set22 |NA    |0     |8         |     1771|      174|
## |AALS-Set22 |NA    |0     |9         |     1882|      117|
## |AALS-Set22 |NA    |0     |11        |     1556|      126|
## |AALS-Set22 |NA    |1     |1         |    11904|      132|
## |AALS-Set22 |NA    |1     |2         |    13293|      156|
## |AALS-Set22 |NA    |1     |3         |    11315|      157|
## |AALS-Set22 |NA    |1     |4         |    12123|      169|
## |AALS-Set22 |NA    |1     |5         |     9461|      194|
## |AALS-Set22 |NA    |1     |6         |     8398|      271|
## |AALS-Set22 |NA    |1     |7         |     7649|      348|
## |AALS-Set22 |NA    |1     |8         |     4775|      505|
## |AALS-Set22 |NA    |1     |9         |     5909|      455|
## |AALS-Set22 |NA    |1     |11        |     6874|      530|
## |AALS-Set25 |NA    |0     |1         |     4884|      205|
## |AALS-Set25 |NA    |0     |2         |     4751|      177|
## |AALS-Set25 |NA    |0     |3         |     3480|      154|
## |AALS-Set25 |NA    |0     |4         |     3942|      197|
## |AALS-Set25 |NA    |0     |5         |     3798|      149|
## |AALS-Set25 |NA    |0     |6         |     4796|      150|
## |AALS-Set25 |NA    |0     |7         |     3565|      170|
## |AALS-Set25 |NA    |0     |8         |     3760|      186|
## |AALS-Set25 |NA    |0     |9         |     2412|      200|
## |AALS-Set25 |NA    |0     |11        |     2616|      444|
## |AALS-Set25 |NA    |1     |1         |     1285|      157|
## |AALS-Set25 |NA    |1     |2         |     1503|      204|
## |AALS-Set25 |NA    |1     |3         |     1750|      186|
## |AALS-Set25 |NA    |1     |4         |     1830|      224|
## |AALS-Set25 |NA    |1     |5         |     2369|      121|
## |AALS-Set25 |NA    |1     |6         |     2848|      106|
## |AALS-Set25 |NA    |1     |7         |     1704|      123|
## |AALS-Set25 |NA    |1     |8         |     1861|      141|
## |AALS-Set25 |NA    |1     |9         |     1307|      165|
## |AALS-Set25 |NA    |1     |11        |     1356|      240|
## |AALS-Set26 |NA    |0     |1         |     2991|       57|
## |AALS-Set26 |NA    |0     |2         |     3209|       49|
## |AALS-Set26 |NA    |0     |3         |     3186|       45|
## |AALS-Set26 |NA    |0     |4         |     3081|       60|
## |AALS-Set26 |NA    |0     |5         |     3063|       67|
## |AALS-Set26 |NA    |0     |6         |     2439|      119|
## |AALS-Set26 |NA    |0     |7         |     2180|      156|
## |AALS-Set26 |NA    |0     |8         |     2311|      112|
## |AALS-Set26 |NA    |0     |9         |     2466|      115|
## |AALS-Set26 |NA    |1     |1         |     1620|       94|
## |AALS-Set26 |NA    |1     |2         |     1703|      121|
## |AALS-Set26 |NA    |1     |3         |     1672|      163|
## |AALS-Set26 |NA    |1     |4         |     1540|      172|
## |AALS-Set26 |NA    |1     |5         |     1573|      216|
## |AALS-Set26 |NA    |1     |6         |     1159|      371|
## |AALS-Set26 |NA    |1     |7         |     1047|      414|
## |AALS-Set26 |NA    |1     |8         |     1103|      423|
## |AALS-Set26 |NA    |1     |9         |     1110|      372|
## |AALS-Set29 |NA    |1     |1         |      993|       42|
## |AALS-Set29 |NA    |1     |2         |      974|       50|
## |AALS-Set29 |NA    |1     |3         |     1091|       59|
## |AALS-Set29 |NA    |1     |6         |      754|       72|
## |AALS-Set29 |NA    |1     |7         |      912|       48|
## |AALS-Set29 |NA    |1     |8         |      956|       38|
## |AALS-Set29 |NA    |1     |9         |      957|       60|
## |AALS-Set29 |NA    |1     |11        |      961|       53|
## |AALS-Set33 |NA    |0     |1         |     2385|      109|
## |AALS-Set33 |NA    |0     |2         |     2420|      106|
## |AALS-Set33 |NA    |0     |5         |     2329|       94|
## |AALS-Set33 |NA    |0     |6         |     2352|       77|
## |AALS-Set33 |NA    |0     |8         |     2157|       97|
## |AALS-Set33 |NA    |0     |9         |     1891|      149|
## |AALS-Set33 |NA    |0     |11        |     1747|      253|
## |AALS-Set34 |NA    |0     |1         |      415|       23|
## |AALS-Set34 |NA    |0     |5         |      460|       33|
## |AALS-Set34 |NA    |0     |6         |      456|       34|
## |AALS-Set34 |NA    |0     |8         |      545|       22|
## |AALS-Set35 |NA    |0     |1         |      446|        7|
## |AALS-Set35 |NA    |0     |2         |      485|        7|
## |AALS-Set35 |NA    |0     |3         |      437|        7|
## |AALS-Set35 |NA    |0     |4         |      357|        9|
## |AALS-Set35 |NA    |0     |5         |      296|        9|
## |AALS-Set35 |NA    |0     |6         |      253|       12|
## |AALS-Set35 |NA    |0     |7         |      162|       13|
## |AALS-Set35 |NA    |0     |8         |      100|       24|
## |AALS-Set41 |NA    |0     |1         |     1087|       10|
## |AALS-Set41 |NA    |0     |2         |      584|       42|
## |AALS-Set41 |NA    |0     |4         |      294|       39|
## |AALS-Set41 |NA    |0     |5         |      322|       10|
## |AALS-Set41 |NA    |0     |8         |      317|        8|
## |AALS-Set41 |NA    |0     |9         |      316|        9|
## |AALS-Set44 |NA    |0     |1         |      800|      291|
## |AALS-Set44 |NA    |0     |2         |     1836|      117|
## |AALS-Set44 |NA    |0     |3         |     1785|       88|
## |AALS-Set44 |NA    |0     |4         |     1721|      116|
## |AALS-Set44 |NA    |0     |5         |      803|      192|
## |AALS-Set44 |NA    |0     |8         |      733|      153|
## |AALS-Set5  |NA    |0     |1         |     3975|      272|
## |AALS-Set5  |NA    |0     |2         |     4548|      341|
## |AALS-Set5  |NA    |0     |3         |     4913|      348|
## |AALS-Set5  |NA    |0     |4         |     5204|      249|
## |AALS-Set5  |NA    |0     |5         |     4802|      270|
## |AALS-Set5  |NA    |0     |7         |     3885|      391|
## |AALS-Set5  |NA    |0     |8         |     3545|      499|
## |AALS-Set5  |NA    |1     |1         |     4418|      654|
## |AALS-Set5  |NA    |1     |2         |     4514|      895|
## |AALS-Set5  |NA    |1     |3         |     4492|     1114|
## |AALS-Set5  |NA    |1     |4         |     4327|     1023|
## |AALS-Set5  |NA    |1     |5         |     4040|     1270|
## |AALS-Set5  |NA    |1     |7         |     3311|     1483|
## |AALS-Set5  |NA    |1     |8         |     2617|     1903|
## |AALS-Set8  |NA    |0     |1         |     4396|      166|
## |AALS-Set8  |NA    |0     |2         |     5031|      149|
## |AALS-Set8  |NA    |0     |3         |     5879|      140|
## |AALS-Set8  |NA    |0     |4         |     6021|      176|
## |AALS-Set8  |NA    |0     |5         |     5972|      195|
## |AALS-Set8  |NA    |0     |6         |     5856|      221|
## |AALS-Set8  |NA    |0     |7         |     5873|      275|
## |AALS-Set8  |NA    |0     |8         |     5768|      411|
## |AALS-Set8  |NA    |1     |1         |     5451|      106|
## |AALS-Set8  |NA    |1     |2         |     6226|       89|
## |AALS-Set8  |NA    |1     |3         |     6920|       79|
## |AALS-Set8  |NA    |1     |4         |     7180|      100|
## |AALS-Set8  |NA    |1     |5         |     7227|      124|
## |AALS-Set8  |NA    |1     |6         |     7069|      126|
## |AALS-Set8  |NA    |1     |7         |     6657|      179|
## |AALS-Set8  |NA    |1     |8         |     6459|      313|
## 
## 
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |AALS-Set10 |    23366|      874|
## |AALS-Set11 |    15856|     2848|
## |AALS-Set12 |    34242|     5069|
## |AALS-Set13 |    57679|     8650|
## |AALS-Set18 |    77385|     4337|
## |AALS-Set20 |   136053|    21881|
## |AALS-Set21 |   138679|    12905|
## |AALS-Set22 |   115072|     4050|
## |AALS-Set25 |    55817|     3699|
## |AALS-Set26 |    37453|     3126|
## |AALS-Set29 |     7598|      422|
## |AALS-Set33 |    15281|      885|
## |AALS-Set34 |     1876|      112|
## |AALS-Set35 |     2536|       88|
## |AALS-Set41 |     2920|      118|
## |AALS-Set44 |     7678|      957|
## |AALS-Set5  |    58591|    10712|
## |AALS-Set8  |    97985|     2849|

————————————————————————

Odds Ratio Comparing Class:

Odds Ratio Comparing: 0 vs 1 with no drug

[1] “Overall significance (p-value) of association across all time-points = 1.28858611469263e-76”

[1] “Akaike Information Criterion (AIC) = 53715.8633344664”

glm - 0 vs 1
Estimate Std. Error z value Pr(>|z|)
(Intercept) -2.8150033 0.3874518 -7.2654292 0.0000000
Class1 -0.2353480 0.4967111 -0.4738126 0.6356336
Timepoint2 -0.1427181 0.0332337 -4.2943786 0.0000175
Timepoint3 -0.0456471 0.0329329 -1.3860640 0.1657274
Timepoint4 -0.0012632 0.0327221 -0.0386054 0.9692050
Timepoint5 0.1026018 0.0316348 3.2433231 0.0011814
Timepoint6 0.3518760 0.0322452 10.9125071 0.0000000
Timepoint7 0.5007101 0.0309861 16.1591656 0.0000000
Timepoint8 0.6549054 0.0296300 22.1028116 0.0000000
Timepoint9 0.6367880 0.0325567 19.5593637 0.0000000
Timepoint11 1.0642445 0.0371255 28.6661614 0.0000000
Class1:Timepoint2 0.2265677 0.0401607 5.6415226 0.0000000
Class1:Timepoint3 0.2741265 0.0394968 6.9404766 0.0000000
Class1:Timepoint4 0.3146997 0.0391756 8.0330474 0.0000000
Class1:Timepoint5 0.4362322 0.0379115 11.5065823 0.0000000
Class1:Timepoint6 0.3687865 0.0385520 9.5659517 0.0000000
Class1:Timepoint7 0.4150658 0.0369132 11.2443654 0.0000000
Class1:Timepoint8 0.5363158 0.0356341 15.0506285 0.0000000
Class1:Timepoint9 0.7033384 0.0423324 16.6146419 0.0000000
Class1:Timepoint11 0.3850900 0.0490287 7.8543729 0.0000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.7902958 0 0.2985250 2.092178 0.2199447 2.839657 0.6356336 0 1
0.9912582 1 0.3744212 2.624298 0.2758595 3.561933 0.9858973 0 1
1.0395403 2 0.3927099 2.751761 0.2893458 3.734784 0.9377660 0 1
1.0825850 3 0.4089899 2.865573 0.3013452 3.889196 0.8730569 0 1
1.2224833 4 0.4619338 3.235237 0.3403756 4.390637 0.6857948 0 1
1.1427510 5 0.4317788 3.024419 0.3181497 4.104609 0.7881454 0 1
1.1968797 6 0.4523370 3.166933 0.3333222 4.297706 0.7173486 0 1
1.3511659 7 0.5107247 3.574625 0.3763655 4.850735 0.5442935 0 1
1.5967821 8 0.6030522 4.228014 0.4442855 5.738907 0.3461946 0 1
1.1615345 9 0.4381543 3.079195 0.3226806 4.181108 0.7633820 0 1
OR Time lower upper lower99 upper99
1.157528 4.5 0.4372627 3.064223 0.3221674 4.158927

First half Mean

OR Time lower upper lower99 upper99
1.025232 2 0.387316 2.71381 0.2853741 3.683241

Second half Mean

OR Time lower upper lower99 upper99
1.289823 7 0.4872094 3.414637 0.3589607 4.634613

Odds Ratio Comparing: 1 vs 0 with no drug

[1] “Overall significance (p-value) of association across all time-points = 1.28858175993879e-76”

[1] “Akaike Information Criterion (AIC) = 53715.8633275649”

glm - 1 vs 0
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.0501178 0.3892820 -7.8352407 0.0000000
Class0 0.2348636 0.4980929 0.4715256 0.6372655
Timepoint2 0.0838848 0.0225517 3.7196647 0.0001995
Timepoint3 0.2285051 0.0218076 10.4782547 0.0000000
Timepoint4 0.3134792 0.0215439 14.5507375 0.0000000
Timepoint5 0.5388628 0.0208969 25.7867393 0.0000000
Timepoint6 0.7206924 0.0211371 34.0960546 0.0000000
Timepoint7 0.9158273 0.0200643 45.6447065 0.0000000
Timepoint8 1.1912670 0.0197994 60.1667714 0.0000000
Timepoint9 1.3401838 0.0270761 49.4969756 0.0000000
Timepoint11 1.4493524 0.0320741 45.1875864 0.0000000
Class0:Timepoint2 -0.2267270 0.0401655 -5.6448233 0.0000000
Class0:Timepoint3 -0.2742090 0.0395008 -6.9418578 0.0000000
Class0:Timepoint4 -0.3148614 0.0391794 -8.0363946 0.0000000
Class0:Timepoint5 -0.4363329 0.0379154 -11.5080601 0.0000000
Class0:Timepoint6 -0.3688850 0.0385563 -9.5674304 0.0000000
Class0:Timepoint7 -0.4152512 0.0369167 -11.2483402 0.0000000
Class0:Timepoint8 -0.5364623 0.0356383 -15.0529898 0.0000000
Class0:Timepoint9 -0.7034846 0.0423370 -16.6162962 0.0000000
Class0:Timepoint11 -0.3852204 0.0490325 -7.8564340 0.0000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
1.2647362 0 0.4764471 3.357262 0.3507345 4.560594 0.6372655 1 0
1.0081698 1 0.3797872 2.676252 0.2795771 3.635513 0.9869670 1 0
0.9614185 2 0.3622218 2.551822 0.2666572 3.466344 0.9370317 1 0
0.9231183 3 0.3478066 2.450061 0.2560485 3.328070 0.8723823 1 0
0.8175287 4 0.3080839 2.169386 0.2268195 2.946630 0.6857526 1 0
0.8745713 5 0.3295587 2.320907 0.2426247 3.152502 0.7878165 1 0
0.8349465 6 0.3147005 2.215235 0.2317029 3.008748 0.7170919 1 0
0.7396348 7 0.2788202 1.962052 0.2052956 2.664741 0.5445648 1 0
0.6258647 8 0.2357330 1.661654 0.1735244 2.257357 0.3468768 1 0
0.8604009 9 0.3236852 2.287067 0.2381775 3.108143 0.7630762 1 0
OR Time lower upper lower99 upper99
0.891039 4.5 0.3356844 2.36517 0.2471162 3.212864

First half Mean

OR Time lower upper lower99 upper99
0.9949943 2 0.3748693 2.640957 0.2759674 3.58743

Second half Mean

OR Time lower upper lower99 upper99
0.7870836 7 0.2964995 2.089383 0.218265 2.838298

[1] TRUE TRUE

Odds Ratio Combined

Reference condition: 0

Odds Ratio Combined

Reference condition: 1

] NULL

[[2]] NULL