MRID Logodd
Julia Kaye
Thomas Reuben
Stephanie Lam
2025-07-11
Last code update: Feb 8, 202s4
User Inputs
source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/Combined_NonLinear Code/sALS high islet1
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/Combined_NonLinear Code/sALS high islet1
drug: FALSE
drug kept: None
line kept: 6GNGiCTR, 5NWTiCTR, 0YX7iCTR, 3DE3iALS, 8RBNiALS,
6WKViALS
multiple_experiments: TRUE
multiple_plates <- FALSE
compare_cellline <- FALSE
compare_class <- TRUE
compare_drug <-FALSE
reference conditions:
## Removing Hours that only appears in one experiment
##
##
## | Hour| count|
## |----:|-----:|
## | 204| 1|##
##
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |AALS-Set10 |NA |0YX7iCTR | 23366| 874|
## |AALS-Set11 |NA |3DE3iALS | 7604| 1574|
## |AALS-Set11 |NA |5NWTiCTR | 8252| 1274|
## |AALS-Set12 |NA |3DE3iALS | 16613| 3247|
## |AALS-Set12 |NA |6GNGiCTR | 17629| 1822|
## |AALS-Set13 |NA |3DE3iALS | 53024| 6685|
## |AALS-Set13 |NA |8RBNiALS | 4655| 1965|
## |AALS-Set18 |NA |6GNGiCTR | 25922| 2562|
## |AALS-Set18 |NA |8RBNiALS | 51463| 1775|
## |AALS-Set20 |NA |6WKViALS | 71775| 8570|
## |AALS-Set20 |NA |8RBNiALS | 64278| 13311|
## |AALS-Set21 |NA |3DE3iALS | 31653| 5297|
## |AALS-Set21 |NA |5NWTiCTR | 44204| 2411|
## |AALS-Set21 |NA |6GNGiCTR | 13651| 3793|
## |AALS-Set21 |NA |6WKViALS | 49171| 1404|
## |AALS-Set22 |NA |0YX7iCTR | 23371| 1133|
## |AALS-Set22 |NA |6WKViALS | 75802| 1622|
## |AALS-Set22 |NA |8RBNiALS | 15899| 1295|
## |AALS-Set25 |NA |0YX7iCTR | 38004| 2032|
## |AALS-Set25 |NA |6WKViALS | 17813| 1667|
## |AALS-Set26 |NA |0YX7iCTR | 24926| 780|
## |AALS-Set26 |NA |8RBNiALS | 12527| 2346|
## |AALS-Set29 |NA |8RBNiALS | 7598| 422|
## |AALS-Set33 |NA |0YX7iCTR | 15281| 885|
## |AALS-Set34 |NA |0YX7iCTR | 1876| 112|
## |AALS-Set35 |NA |0YX7iCTR | 2536| 88|
## |AALS-Set41 |NA |0YX7iCTR | 2920| 118|
## |AALS-Set44 |NA |0YX7iCTR | 7678| 957|
## |AALS-Set5 |NA |5NWTiCTR | 30872| 2370|
## |AALS-Set5 |NA |6WKViALS | 27719| 8342|
## |AALS-Set8 |NA |3DE3iALS | 53189| 1116|
## |AALS-Set8 |NA |5NWTiCTR | 44796| 1733|##
##
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |AALS-Set10 |NA |0YX7iCTR |1 |0 | 2298| 69|
## |AALS-Set10 |NA |0YX7iCTR |2 |24 | 2482| 74|
## |AALS-Set10 |NA |0YX7iCTR |3 |48 | 2668| 98|
## |AALS-Set10 |NA |0YX7iCTR |4 |72 | 2804| 86|
## |AALS-Set10 |NA |0YX7iCTR |5 |96 | 2983| 78|
## |AALS-Set10 |NA |0YX7iCTR |6 |120 | 2826| 84|
## |AALS-Set10 |NA |0YX7iCTR |7 |144 | 2557| 128|
## |AALS-Set10 |NA |0YX7iCTR |8 |168 | 2635| 93|
## |AALS-Set10 |NA |0YX7iCTR |9 |192 | 2113| 164|
## |AALS-Set11 |NA |3DE3iALS |1 |0 | 955| 44|
## |AALS-Set11 |NA |3DE3iALS |2 |24 | 988| 56|
## |AALS-Set11 |NA |3DE3iALS |3 |48 | 928| 89|
## |AALS-Set11 |NA |3DE3iALS |4 |72 | 923| 110|
## |AALS-Set11 |NA |3DE3iALS |5 |96 | 769| 175|
## |AALS-Set11 |NA |3DE3iALS |6 |120 | 759| 259|
## |AALS-Set11 |NA |3DE3iALS |7 |144 | 704| 365|
## |AALS-Set11 |NA |3DE3iALS |8 |168 | 852| 217|
## |AALS-Set11 |NA |3DE3iALS |9 |192 | 726| 259|
## |AALS-Set11 |NA |5NWTiCTR |1 |0 | 529| 53|
## |AALS-Set11 |NA |5NWTiCTR |2 |24 | 727| 61|
## |AALS-Set11 |NA |5NWTiCTR |3 |48 | 885| 133|
## |AALS-Set11 |NA |5NWTiCTR |4 |72 | 850| 105|
## |AALS-Set11 |NA |5NWTiCTR |5 |96 | 1049| 157|
## |AALS-Set11 |NA |5NWTiCTR |6 |120 | 1031| 224|
## |AALS-Set11 |NA |5NWTiCTR |7 |144 | 1014| 257|
## |AALS-Set11 |NA |5NWTiCTR |8 |168 | 952| 148|
## |AALS-Set11 |NA |5NWTiCTR |9 |192 | 1215| 136|
## |AALS-Set12 |NA |3DE3iALS |1 |0 | 2270| 78|
## |AALS-Set12 |NA |3DE3iALS |2 |24 | 2491| 112|
## |AALS-Set12 |NA |3DE3iALS |3 |48 | 2569| 130|
## |AALS-Set12 |NA |3DE3iALS |4 |72 | 1774| 240|
## |AALS-Set12 |NA |3DE3iALS |5 |96 | 1764| 371|
## |AALS-Set12 |NA |3DE3iALS |6 |120 | 1658| 552|
## |AALS-Set12 |NA |3DE3iALS |7 |144 | 1837| 483|
## |AALS-Set12 |NA |3DE3iALS |8 |168 | 1124| 612|
## |AALS-Set12 |NA |3DE3iALS |9 |192 | 1126| 669|
## |AALS-Set12 |NA |6GNGiCTR |1 |0 | 2234| 105|
## |AALS-Set12 |NA |6GNGiCTR |2 |24 | 2160| 104|
## |AALS-Set12 |NA |6GNGiCTR |3 |48 | 2349| 88|
## |AALS-Set12 |NA |6GNGiCTR |4 |72 | 1621| 166|
## |AALS-Set12 |NA |6GNGiCTR |5 |96 | 1788| 183|
## |AALS-Set12 |NA |6GNGiCTR |6 |120 | 1822| 292|
## |AALS-Set12 |NA |6GNGiCTR |7 |144 | 2224| 173|
## |AALS-Set12 |NA |6GNGiCTR |8 |168 | 1673| 322|
## |AALS-Set12 |NA |6GNGiCTR |9 |192 | 1758| 389|
## |AALS-Set13 |NA |3DE3iALS |1 |0 | 6248| 341|
## |AALS-Set13 |NA |3DE3iALS |2 |24 | 6441| 409|
## |AALS-Set13 |NA |3DE3iALS |3 |48 | 7019| 560|
## |AALS-Set13 |NA |3DE3iALS |4 |72 | 7223| 576|
## |AALS-Set13 |NA |3DE3iALS |5 |96 | 6700| 976|
## |AALS-Set13 |NA |3DE3iALS |6 |120 | 6730| 1030|
## |AALS-Set13 |NA |3DE3iALS |7 |144 | 6635| 1217|
## |AALS-Set13 |NA |3DE3iALS |8 |168 | 6028| 1576|
## |AALS-Set13 |NA |8RBNiALS |1 |0 | 900| 174|
## |AALS-Set13 |NA |8RBNiALS |2 |24 | 766| 234|
## |AALS-Set13 |NA |8RBNiALS |3 |48 | 651| 275|
## |AALS-Set13 |NA |8RBNiALS |4 |72 | 581| 261|
## |AALS-Set13 |NA |8RBNiALS |5 |96 | 472| 271|
## |AALS-Set13 |NA |8RBNiALS |6 |120 | 461| 248|
## |AALS-Set13 |NA |8RBNiALS |7 |144 | 424| 257|
## |AALS-Set13 |NA |8RBNiALS |8 |168 | 400| 245|
## |AALS-Set18 |NA |6GNGiCTR |1 |0 | 3108| 318|
## |AALS-Set18 |NA |6GNGiCTR |2 |24 | 3111| 258|
## |AALS-Set18 |NA |6GNGiCTR |3 |48 | 3195| 368|
## |AALS-Set18 |NA |6GNGiCTR |4 |72 | 2888| 353|
## |AALS-Set18 |NA |6GNGiCTR |5 |96 | 3357| 295|
## |AALS-Set18 |NA |6GNGiCTR |6 |120 | 2604| 244|
## |AALS-Set18 |NA |6GNGiCTR |7 |144 | 2353| 261|
## |AALS-Set18 |NA |6GNGiCTR |8 |168 | 2606| 283|
## |AALS-Set18 |NA |6GNGiCTR |9 |192 | 2700| 182|
## |AALS-Set18 |NA |8RBNiALS |1 |0 | 5333| 271|
## |AALS-Set18 |NA |8RBNiALS |2 |24 | 4960| 183|
## |AALS-Set18 |NA |8RBNiALS |3 |48 | 6057| 240|
## |AALS-Set18 |NA |8RBNiALS |4 |72 | 6978| 179|
## |AALS-Set18 |NA |8RBNiALS |5 |96 | 7243| 178|
## |AALS-Set18 |NA |8RBNiALS |6 |120 | 5660| 185|
## |AALS-Set18 |NA |8RBNiALS |7 |144 | 5667| 184|
## |AALS-Set18 |NA |8RBNiALS |8 |168 | 5378| 193|
## |AALS-Set18 |NA |8RBNiALS |9 |192 | 4187| 162|
## |AALS-Set20 |NA |6WKViALS |1 |0 | 7286| 693|
## |AALS-Set20 |NA |6WKViALS |2 |24 | 8424| 801|
## |AALS-Set20 |NA |6WKViALS |3 |48 | 8317| 812|
## |AALS-Set20 |NA |6WKViALS |4 |72 | 8908| 967|
## |AALS-Set20 |NA |6WKViALS |5 |96 | 9166| 896|
## |AALS-Set20 |NA |6WKViALS |6 |120 | 9773| 1254|
## |AALS-Set20 |NA |6WKViALS |7 |144 | 9896| 1551|
## |AALS-Set20 |NA |6WKViALS |8 |168 | 10005| 1596|
## |AALS-Set20 |NA |8RBNiALS |1 |0 | 7550| 934|
## |AALS-Set20 |NA |8RBNiALS |2 |24 | 7983| 1009|
## |AALS-Set20 |NA |8RBNiALS |3 |48 | 8462| 1272|
## |AALS-Set20 |NA |8RBNiALS |4 |72 | 8752| 1528|
## |AALS-Set20 |NA |8RBNiALS |5 |96 | 8083| 1869|
## |AALS-Set20 |NA |8RBNiALS |6 |120 | 8171| 1909|
## |AALS-Set20 |NA |8RBNiALS |7 |144 | 7859| 2211|
## |AALS-Set20 |NA |8RBNiALS |8 |168 | 7418| 2579|
## |AALS-Set21 |NA |3DE3iALS |1 |0 | 3398| 242|
## |AALS-Set21 |NA |3DE3iALS |2 |24 | 3645| 271|
## |AALS-Set21 |NA |3DE3iALS |3 |48 | 4049| 304|
## |AALS-Set21 |NA |3DE3iALS |4 |72 | 3489| 290|
## |AALS-Set21 |NA |3DE3iALS |5 |96 | 3641| 411|
## |AALS-Set21 |NA |3DE3iALS |6 |120 | 3585| 530|
## |AALS-Set21 |NA |3DE3iALS |7 |144 | 3391| 675|
## |AALS-Set21 |NA |3DE3iALS |8 |168 | 2227| 802|
## |AALS-Set21 |NA |3DE3iALS |9 |192 | 2197| 854|
## |AALS-Set21 |NA |3DE3iALS |11 |216 | 2031| 918|
## |AALS-Set21 |NA |5NWTiCTR |1 |0 | 4184| 108|
## |AALS-Set21 |NA |5NWTiCTR |2 |24 | 4541| 126|
## |AALS-Set21 |NA |5NWTiCTR |3 |48 | 4865| 131|
## |AALS-Set21 |NA |5NWTiCTR |4 |72 | 4607| 137|
## |AALS-Set21 |NA |5NWTiCTR |5 |96 | 4736| 183|
## |AALS-Set21 |NA |5NWTiCTR |6 |120 | 4874| 223|
## |AALS-Set21 |NA |5NWTiCTR |7 |144 | 4682| 272|
## |AALS-Set21 |NA |5NWTiCTR |8 |168 | 3675| 407|
## |AALS-Set21 |NA |5NWTiCTR |9 |192 | 4002| 425|
## |AALS-Set21 |NA |5NWTiCTR |11 |216 | 4038| 399|
## |AALS-Set21 |NA |6GNGiCTR |1 |0 | 1419| 178|
## |AALS-Set21 |NA |6GNGiCTR |2 |24 | 1336| 226|
## |AALS-Set21 |NA |6GNGiCTR |3 |48 | 1356| 323|
## |AALS-Set21 |NA |6GNGiCTR |4 |72 | 1483| 290|
## |AALS-Set21 |NA |6GNGiCTR |5 |96 | 1512| 358|
## |AALS-Set21 |NA |6GNGiCTR |6 |120 | 1331| 460|
## |AALS-Set21 |NA |6GNGiCTR |7 |144 | 1245| 522|
## |AALS-Set21 |NA |6GNGiCTR |8 |168 | 1302| 511|
## |AALS-Set21 |NA |6GNGiCTR |9 |192 | 1456| 485|
## |AALS-Set21 |NA |6GNGiCTR |11 |216 | 1211| 440|
## |AALS-Set21 |NA |6WKViALS |1 |0 | 3921| 130|
## |AALS-Set21 |NA |6WKViALS |2 |24 | 4362| 133|
## |AALS-Set21 |NA |6WKViALS |3 |48 | 4668| 141|
## |AALS-Set21 |NA |6WKViALS |4 |72 | 5294| 139|
## |AALS-Set21 |NA |6WKViALS |5 |96 | 5791| 124|
## |AALS-Set21 |NA |6WKViALS |6 |120 | 5453| 141|
## |AALS-Set21 |NA |6WKViALS |7 |144 | 5342| 173|
## |AALS-Set21 |NA |6WKViALS |8 |168 | 4285| 181|
## |AALS-Set21 |NA |6WKViALS |9 |192 | 5037| 121|
## |AALS-Set21 |NA |6WKViALS |11 |216 | 5018| 121|
## |AALS-Set22 |NA |0YX7iCTR |1 |0 | 2795| 55|
## |AALS-Set22 |NA |0YX7iCTR |2 |24 | 3011| 56|
## |AALS-Set22 |NA |0YX7iCTR |3 |48 | 2856| 89|
## |AALS-Set22 |NA |0YX7iCTR |4 |72 | 2984| 88|
## |AALS-Set22 |NA |0YX7iCTR |5 |96 | 2477| 108|
## |AALS-Set22 |NA |0YX7iCTR |6 |120 | 2143| 162|
## |AALS-Set22 |NA |0YX7iCTR |7 |144 | 1896| 158|
## |AALS-Set22 |NA |0YX7iCTR |8 |168 | 1771| 174|
## |AALS-Set22 |NA |0YX7iCTR |9 |192 | 1882| 117|
## |AALS-Set22 |NA |0YX7iCTR |11 |216 | 1556| 126|
## |AALS-Set22 |NA |6WKViALS |1 |0 | 9766| 78|
## |AALS-Set22 |NA |6WKViALS |2 |24 | 10876| 114|
## |AALS-Set22 |NA |6WKViALS |3 |48 | 9398| 97|
## |AALS-Set22 |NA |6WKViALS |4 |72 | 10112| 97|
## |AALS-Set22 |NA |6WKViALS |5 |96 | 7721| 107|
## |AALS-Set22 |NA |6WKViALS |6 |120 | 6889| 143|
## |AALS-Set22 |NA |6WKViALS |7 |144 | 6259| 211|
## |AALS-Set22 |NA |6WKViALS |8 |168 | 4085| 271|
## |AALS-Set22 |NA |6WKViALS |9 |192 | 4984| 221|
## |AALS-Set22 |NA |6WKViALS |11 |216 | 5712| 283|
## |AALS-Set22 |NA |8RBNiALS |1 |0 | 2138| 54|
## |AALS-Set22 |NA |8RBNiALS |2 |24 | 2417| 42|
## |AALS-Set22 |NA |8RBNiALS |3 |48 | 1917| 60|
## |AALS-Set22 |NA |8RBNiALS |4 |72 | 2011| 72|
## |AALS-Set22 |NA |8RBNiALS |5 |96 | 1740| 87|
## |AALS-Set22 |NA |8RBNiALS |6 |120 | 1509| 128|
## |AALS-Set22 |NA |8RBNiALS |7 |144 | 1390| 137|
## |AALS-Set22 |NA |8RBNiALS |8 |168 | 690| 234|
## |AALS-Set22 |NA |8RBNiALS |9 |192 | 925| 234|
## |AALS-Set22 |NA |8RBNiALS |11 |216 | 1162| 247|
## |AALS-Set25 |NA |0YX7iCTR |1 |0 | 4884| 205|
## |AALS-Set25 |NA |0YX7iCTR |2 |24 | 4751| 177|
## |AALS-Set25 |NA |0YX7iCTR |3 |48 | 3480| 154|
## |AALS-Set25 |NA |0YX7iCTR |4 |72 | 3942| 197|
## |AALS-Set25 |NA |0YX7iCTR |5 |96 | 3798| 149|
## |AALS-Set25 |NA |0YX7iCTR |6 |120 | 4796| 150|
## |AALS-Set25 |NA |0YX7iCTR |7 |144 | 3565| 170|
## |AALS-Set25 |NA |0YX7iCTR |8 |168 | 3760| 186|
## |AALS-Set25 |NA |0YX7iCTR |9 |192 | 2412| 200|
## |AALS-Set25 |NA |0YX7iCTR |11 |216 | 2616| 444|
## |AALS-Set25 |NA |6WKViALS |1 |0 | 1285| 157|
## |AALS-Set25 |NA |6WKViALS |2 |24 | 1503| 204|
## |AALS-Set25 |NA |6WKViALS |3 |48 | 1750| 186|
## |AALS-Set25 |NA |6WKViALS |4 |72 | 1830| 224|
## |AALS-Set25 |NA |6WKViALS |5 |96 | 2369| 121|
## |AALS-Set25 |NA |6WKViALS |6 |120 | 2848| 106|
## |AALS-Set25 |NA |6WKViALS |7 |144 | 1704| 123|
## |AALS-Set25 |NA |6WKViALS |8 |168 | 1861| 141|
## |AALS-Set25 |NA |6WKViALS |9 |192 | 1307| 165|
## |AALS-Set25 |NA |6WKViALS |11 |216 | 1356| 240|
## |AALS-Set26 |NA |0YX7iCTR |1 |0 | 2991| 57|
## |AALS-Set26 |NA |0YX7iCTR |2 |24 | 3209| 49|
## |AALS-Set26 |NA |0YX7iCTR |3 |48 | 3186| 45|
## |AALS-Set26 |NA |0YX7iCTR |4 |72 | 3081| 60|
## |AALS-Set26 |NA |0YX7iCTR |5 |96 | 3063| 67|
## |AALS-Set26 |NA |0YX7iCTR |6 |120 | 2439| 119|
## |AALS-Set26 |NA |0YX7iCTR |7 |144 | 2180| 156|
## |AALS-Set26 |NA |0YX7iCTR |8 |168 | 2311| 112|
## |AALS-Set26 |NA |0YX7iCTR |9 |192 | 2466| 115|
## |AALS-Set26 |NA |8RBNiALS |1 |0 | 1620| 94|
## |AALS-Set26 |NA |8RBNiALS |2 |24 | 1703| 121|
## |AALS-Set26 |NA |8RBNiALS |3 |48 | 1672| 163|
## |AALS-Set26 |NA |8RBNiALS |4 |72 | 1540| 172|
## |AALS-Set26 |NA |8RBNiALS |5 |96 | 1573| 216|
## |AALS-Set26 |NA |8RBNiALS |6 |120 | 1159| 371|
## |AALS-Set26 |NA |8RBNiALS |7 |144 | 1047| 414|
## |AALS-Set26 |NA |8RBNiALS |8 |168 | 1103| 423|
## |AALS-Set26 |NA |8RBNiALS |9 |192 | 1110| 372|
## |AALS-Set29 |NA |8RBNiALS |1 |0 | 993| 42|
## |AALS-Set29 |NA |8RBNiALS |2 |24 | 974| 50|
## |AALS-Set29 |NA |8RBNiALS |3 |48 | 1091| 59|
## |AALS-Set29 |NA |8RBNiALS |6 |120 | 754| 72|
## |AALS-Set29 |NA |8RBNiALS |7 |144 | 912| 48|
## |AALS-Set29 |NA |8RBNiALS |8 |168 | 956| 38|
## |AALS-Set29 |NA |8RBNiALS |9 |192 | 957| 60|
## |AALS-Set29 |NA |8RBNiALS |11 |216 | 961| 53|
## |AALS-Set33 |NA |0YX7iCTR |1 |0 | 2385| 109|
## |AALS-Set33 |NA |0YX7iCTR |2 |24 | 2420| 106|
## |AALS-Set33 |NA |0YX7iCTR |5 |96 | 2329| 94|
## |AALS-Set33 |NA |0YX7iCTR |6 |120 | 2352| 77|
## |AALS-Set33 |NA |0YX7iCTR |8 |168 | 2157| 97|
## |AALS-Set33 |NA |0YX7iCTR |9 |192 | 1891| 149|
## |AALS-Set33 |NA |0YX7iCTR |11 |216 | 1747| 253|
## |AALS-Set34 |NA |0YX7iCTR |1 |0 | 415| 23|
## |AALS-Set34 |NA |0YX7iCTR |5 |96 | 460| 33|
## |AALS-Set34 |NA |0YX7iCTR |6 |120 | 456| 34|
## |AALS-Set34 |NA |0YX7iCTR |8 |168 | 545| 22|
## |AALS-Set35 |NA |0YX7iCTR |1 |0 | 446| 7|
## |AALS-Set35 |NA |0YX7iCTR |2 |24 | 485| 7|
## |AALS-Set35 |NA |0YX7iCTR |3 |48 | 437| 7|
## |AALS-Set35 |NA |0YX7iCTR |4 |72 | 357| 9|
## |AALS-Set35 |NA |0YX7iCTR |5 |96 | 296| 9|
## |AALS-Set35 |NA |0YX7iCTR |6 |120 | 253| 12|
## |AALS-Set35 |NA |0YX7iCTR |7 |144 | 162| 13|
## |AALS-Set35 |NA |0YX7iCTR |8 |168 | 100| 24|
## |AALS-Set41 |NA |0YX7iCTR |1 |0 | 1087| 10|
## |AALS-Set41 |NA |0YX7iCTR |2 |24 | 584| 42|
## |AALS-Set41 |NA |0YX7iCTR |4 |72 | 294| 39|
## |AALS-Set41 |NA |0YX7iCTR |5 |96 | 322| 10|
## |AALS-Set41 |NA |0YX7iCTR |8 |168 | 317| 8|
## |AALS-Set41 |NA |0YX7iCTR |9 |192 | 316| 9|
## |AALS-Set44 |NA |0YX7iCTR |1 |0 | 800| 291|
## |AALS-Set44 |NA |0YX7iCTR |2 |24 | 1836| 117|
## |AALS-Set44 |NA |0YX7iCTR |3 |48 | 1785| 88|
## |AALS-Set44 |NA |0YX7iCTR |4 |72 | 1721| 116|
## |AALS-Set44 |NA |0YX7iCTR |5 |96 | 803| 192|
## |AALS-Set44 |NA |0YX7iCTR |8 |168 | 733| 153|
## |AALS-Set5 |NA |5NWTiCTR |1 |0 | 3975| 272|
## |AALS-Set5 |NA |5NWTiCTR |2 |24 | 4548| 341|
## |AALS-Set5 |NA |5NWTiCTR |3 |48 | 4913| 348|
## |AALS-Set5 |NA |5NWTiCTR |4 |72 | 5204| 249|
## |AALS-Set5 |NA |5NWTiCTR |5 |96 | 4802| 270|
## |AALS-Set5 |NA |5NWTiCTR |7 |144 | 3885| 391|
## |AALS-Set5 |NA |5NWTiCTR |8 |168 | 3545| 499|
## |AALS-Set5 |NA |6WKViALS |1 |0 | 4418| 654|
## |AALS-Set5 |NA |6WKViALS |2 |24 | 4514| 895|
## |AALS-Set5 |NA |6WKViALS |3 |48 | 4492| 1114|
## |AALS-Set5 |NA |6WKViALS |4 |72 | 4327| 1023|
## |AALS-Set5 |NA |6WKViALS |5 |96 | 4040| 1270|
## |AALS-Set5 |NA |6WKViALS |7 |144 | 3311| 1483|
## |AALS-Set5 |NA |6WKViALS |8 |168 | 2617| 1903|
## |AALS-Set8 |NA |3DE3iALS |1 |0 | 5451| 106|
## |AALS-Set8 |NA |3DE3iALS |2 |24 | 6226| 89|
## |AALS-Set8 |NA |3DE3iALS |3 |48 | 6920| 79|
## |AALS-Set8 |NA |3DE3iALS |4 |72 | 7180| 100|
## |AALS-Set8 |NA |3DE3iALS |5 |96 | 7227| 124|
## |AALS-Set8 |NA |3DE3iALS |6 |120 | 7069| 126|
## |AALS-Set8 |NA |3DE3iALS |7 |144 | 6657| 179|
## |AALS-Set8 |NA |3DE3iALS |8 |168 | 6459| 313|
## |AALS-Set8 |NA |5NWTiCTR |1 |0 | 4396| 166|
## |AALS-Set8 |NA |5NWTiCTR |2 |24 | 5031| 149|
## |AALS-Set8 |NA |5NWTiCTR |3 |48 | 5879| 140|
## |AALS-Set8 |NA |5NWTiCTR |4 |72 | 6021| 176|
## |AALS-Set8 |NA |5NWTiCTR |5 |96 | 5972| 195|
## |AALS-Set8 |NA |5NWTiCTR |6 |120 | 5856| 221|
## |AALS-Set8 |NA |5NWTiCTR |7 |144 | 5873| 275|
## |AALS-Set8 |NA |5NWTiCTR |8 |168 | 5768| 411|##
##
## |Experiment |Plate |Class |Timepoint | sum_live| sum_dead|
## |:----------|:-----|:-----|:---------|--------:|--------:|
## |AALS-Set10 |NA |0 |1 | 2298| 69|
## |AALS-Set10 |NA |0 |2 | 2482| 74|
## |AALS-Set10 |NA |0 |3 | 2668| 98|
## |AALS-Set10 |NA |0 |4 | 2804| 86|
## |AALS-Set10 |NA |0 |5 | 2983| 78|
## |AALS-Set10 |NA |0 |6 | 2826| 84|
## |AALS-Set10 |NA |0 |7 | 2557| 128|
## |AALS-Set10 |NA |0 |8 | 2635| 93|
## |AALS-Set10 |NA |0 |9 | 2113| 164|
## |AALS-Set11 |NA |0 |1 | 529| 53|
## |AALS-Set11 |NA |0 |2 | 727| 61|
## |AALS-Set11 |NA |0 |3 | 885| 133|
## |AALS-Set11 |NA |0 |4 | 850| 105|
## |AALS-Set11 |NA |0 |5 | 1049| 157|
## |AALS-Set11 |NA |0 |6 | 1031| 224|
## |AALS-Set11 |NA |0 |7 | 1014| 257|
## |AALS-Set11 |NA |0 |8 | 952| 148|
## |AALS-Set11 |NA |0 |9 | 1215| 136|
## |AALS-Set11 |NA |1 |1 | 955| 44|
## |AALS-Set11 |NA |1 |2 | 988| 56|
## |AALS-Set11 |NA |1 |3 | 928| 89|
## |AALS-Set11 |NA |1 |4 | 923| 110|
## |AALS-Set11 |NA |1 |5 | 769| 175|
## |AALS-Set11 |NA |1 |6 | 759| 259|
## |AALS-Set11 |NA |1 |7 | 704| 365|
## |AALS-Set11 |NA |1 |8 | 852| 217|
## |AALS-Set11 |NA |1 |9 | 726| 259|
## |AALS-Set12 |NA |0 |1 | 2234| 105|
## |AALS-Set12 |NA |0 |2 | 2160| 104|
## |AALS-Set12 |NA |0 |3 | 2349| 88|
## |AALS-Set12 |NA |0 |4 | 1621| 166|
## |AALS-Set12 |NA |0 |5 | 1788| 183|
## |AALS-Set12 |NA |0 |6 | 1822| 292|
## |AALS-Set12 |NA |0 |7 | 2224| 173|
## |AALS-Set12 |NA |0 |8 | 1673| 322|
## |AALS-Set12 |NA |0 |9 | 1758| 389|
## |AALS-Set12 |NA |1 |1 | 2270| 78|
## |AALS-Set12 |NA |1 |2 | 2491| 112|
## |AALS-Set12 |NA |1 |3 | 2569| 130|
## |AALS-Set12 |NA |1 |4 | 1774| 240|
## |AALS-Set12 |NA |1 |5 | 1764| 371|
## |AALS-Set12 |NA |1 |6 | 1658| 552|
## |AALS-Set12 |NA |1 |7 | 1837| 483|
## |AALS-Set12 |NA |1 |8 | 1124| 612|
## |AALS-Set12 |NA |1 |9 | 1126| 669|
## |AALS-Set13 |NA |1 |1 | 7148| 515|
## |AALS-Set13 |NA |1 |2 | 7207| 643|
## |AALS-Set13 |NA |1 |3 | 7670| 835|
## |AALS-Set13 |NA |1 |4 | 7804| 837|
## |AALS-Set13 |NA |1 |5 | 7172| 1247|
## |AALS-Set13 |NA |1 |6 | 7191| 1278|
## |AALS-Set13 |NA |1 |7 | 7059| 1474|
## |AALS-Set13 |NA |1 |8 | 6428| 1821|
## |AALS-Set18 |NA |0 |1 | 3108| 318|
## |AALS-Set18 |NA |0 |2 | 3111| 258|
## |AALS-Set18 |NA |0 |3 | 3195| 368|
## |AALS-Set18 |NA |0 |4 | 2888| 353|
## |AALS-Set18 |NA |0 |5 | 3357| 295|
## |AALS-Set18 |NA |0 |6 | 2604| 244|
## |AALS-Set18 |NA |0 |7 | 2353| 261|
## |AALS-Set18 |NA |0 |8 | 2606| 283|
## |AALS-Set18 |NA |0 |9 | 2700| 182|
## |AALS-Set18 |NA |1 |1 | 5333| 271|
## |AALS-Set18 |NA |1 |2 | 4960| 183|
## |AALS-Set18 |NA |1 |3 | 6057| 240|
## |AALS-Set18 |NA |1 |4 | 6978| 179|
## |AALS-Set18 |NA |1 |5 | 7243| 178|
## |AALS-Set18 |NA |1 |6 | 5660| 185|
## |AALS-Set18 |NA |1 |7 | 5667| 184|
## |AALS-Set18 |NA |1 |8 | 5378| 193|
## |AALS-Set18 |NA |1 |9 | 4187| 162|
## |AALS-Set20 |NA |1 |1 | 14836| 1627|
## |AALS-Set20 |NA |1 |2 | 16407| 1810|
## |AALS-Set20 |NA |1 |3 | 16779| 2084|
## |AALS-Set20 |NA |1 |4 | 17660| 2495|
## |AALS-Set20 |NA |1 |5 | 17249| 2765|
## |AALS-Set20 |NA |1 |6 | 17944| 3163|
## |AALS-Set20 |NA |1 |7 | 17755| 3762|
## |AALS-Set20 |NA |1 |8 | 17423| 4175|
## |AALS-Set21 |NA |0 |1 | 5603| 286|
## |AALS-Set21 |NA |0 |2 | 5877| 352|
## |AALS-Set21 |NA |0 |3 | 6221| 454|
## |AALS-Set21 |NA |0 |4 | 6090| 427|
## |AALS-Set21 |NA |0 |5 | 6248| 541|
## |AALS-Set21 |NA |0 |6 | 6205| 683|
## |AALS-Set21 |NA |0 |7 | 5927| 794|
## |AALS-Set21 |NA |0 |8 | 4977| 918|
## |AALS-Set21 |NA |0 |9 | 5458| 910|
## |AALS-Set21 |NA |0 |11 | 5249| 839|
## |AALS-Set21 |NA |1 |1 | 7319| 372|
## |AALS-Set21 |NA |1 |2 | 8007| 404|
## |AALS-Set21 |NA |1 |3 | 8717| 445|
## |AALS-Set21 |NA |1 |4 | 8783| 429|
## |AALS-Set21 |NA |1 |5 | 9432| 535|
## |AALS-Set21 |NA |1 |6 | 9038| 671|
## |AALS-Set21 |NA |1 |7 | 8733| 848|
## |AALS-Set21 |NA |1 |8 | 6512| 983|
## |AALS-Set21 |NA |1 |9 | 7234| 975|
## |AALS-Set21 |NA |1 |11 | 7049| 1039|
## |AALS-Set22 |NA |0 |1 | 2795| 55|
## |AALS-Set22 |NA |0 |2 | 3011| 56|
## |AALS-Set22 |NA |0 |3 | 2856| 89|
## |AALS-Set22 |NA |0 |4 | 2984| 88|
## |AALS-Set22 |NA |0 |5 | 2477| 108|
## |AALS-Set22 |NA |0 |6 | 2143| 162|
## |AALS-Set22 |NA |0 |7 | 1896| 158|
## |AALS-Set22 |NA |0 |8 | 1771| 174|
## |AALS-Set22 |NA |0 |9 | 1882| 117|
## |AALS-Set22 |NA |0 |11 | 1556| 126|
## |AALS-Set22 |NA |1 |1 | 11904| 132|
## |AALS-Set22 |NA |1 |2 | 13293| 156|
## |AALS-Set22 |NA |1 |3 | 11315| 157|
## |AALS-Set22 |NA |1 |4 | 12123| 169|
## |AALS-Set22 |NA |1 |5 | 9461| 194|
## |AALS-Set22 |NA |1 |6 | 8398| 271|
## |AALS-Set22 |NA |1 |7 | 7649| 348|
## |AALS-Set22 |NA |1 |8 | 4775| 505|
## |AALS-Set22 |NA |1 |9 | 5909| 455|
## |AALS-Set22 |NA |1 |11 | 6874| 530|
## |AALS-Set25 |NA |0 |1 | 4884| 205|
## |AALS-Set25 |NA |0 |2 | 4751| 177|
## |AALS-Set25 |NA |0 |3 | 3480| 154|
## |AALS-Set25 |NA |0 |4 | 3942| 197|
## |AALS-Set25 |NA |0 |5 | 3798| 149|
## |AALS-Set25 |NA |0 |6 | 4796| 150|
## |AALS-Set25 |NA |0 |7 | 3565| 170|
## |AALS-Set25 |NA |0 |8 | 3760| 186|
## |AALS-Set25 |NA |0 |9 | 2412| 200|
## |AALS-Set25 |NA |0 |11 | 2616| 444|
## |AALS-Set25 |NA |1 |1 | 1285| 157|
## |AALS-Set25 |NA |1 |2 | 1503| 204|
## |AALS-Set25 |NA |1 |3 | 1750| 186|
## |AALS-Set25 |NA |1 |4 | 1830| 224|
## |AALS-Set25 |NA |1 |5 | 2369| 121|
## |AALS-Set25 |NA |1 |6 | 2848| 106|
## |AALS-Set25 |NA |1 |7 | 1704| 123|
## |AALS-Set25 |NA |1 |8 | 1861| 141|
## |AALS-Set25 |NA |1 |9 | 1307| 165|
## |AALS-Set25 |NA |1 |11 | 1356| 240|
## |AALS-Set26 |NA |0 |1 | 2991| 57|
## |AALS-Set26 |NA |0 |2 | 3209| 49|
## |AALS-Set26 |NA |0 |3 | 3186| 45|
## |AALS-Set26 |NA |0 |4 | 3081| 60|
## |AALS-Set26 |NA |0 |5 | 3063| 67|
## |AALS-Set26 |NA |0 |6 | 2439| 119|
## |AALS-Set26 |NA |0 |7 | 2180| 156|
## |AALS-Set26 |NA |0 |8 | 2311| 112|
## |AALS-Set26 |NA |0 |9 | 2466| 115|
## |AALS-Set26 |NA |1 |1 | 1620| 94|
## |AALS-Set26 |NA |1 |2 | 1703| 121|
## |AALS-Set26 |NA |1 |3 | 1672| 163|
## |AALS-Set26 |NA |1 |4 | 1540| 172|
## |AALS-Set26 |NA |1 |5 | 1573| 216|
## |AALS-Set26 |NA |1 |6 | 1159| 371|
## |AALS-Set26 |NA |1 |7 | 1047| 414|
## |AALS-Set26 |NA |1 |8 | 1103| 423|
## |AALS-Set26 |NA |1 |9 | 1110| 372|
## |AALS-Set29 |NA |1 |1 | 993| 42|
## |AALS-Set29 |NA |1 |2 | 974| 50|
## |AALS-Set29 |NA |1 |3 | 1091| 59|
## |AALS-Set29 |NA |1 |6 | 754| 72|
## |AALS-Set29 |NA |1 |7 | 912| 48|
## |AALS-Set29 |NA |1 |8 | 956| 38|
## |AALS-Set29 |NA |1 |9 | 957| 60|
## |AALS-Set29 |NA |1 |11 | 961| 53|
## |AALS-Set33 |NA |0 |1 | 2385| 109|
## |AALS-Set33 |NA |0 |2 | 2420| 106|
## |AALS-Set33 |NA |0 |5 | 2329| 94|
## |AALS-Set33 |NA |0 |6 | 2352| 77|
## |AALS-Set33 |NA |0 |8 | 2157| 97|
## |AALS-Set33 |NA |0 |9 | 1891| 149|
## |AALS-Set33 |NA |0 |11 | 1747| 253|
## |AALS-Set34 |NA |0 |1 | 415| 23|
## |AALS-Set34 |NA |0 |5 | 460| 33|
## |AALS-Set34 |NA |0 |6 | 456| 34|
## |AALS-Set34 |NA |0 |8 | 545| 22|
## |AALS-Set35 |NA |0 |1 | 446| 7|
## |AALS-Set35 |NA |0 |2 | 485| 7|
## |AALS-Set35 |NA |0 |3 | 437| 7|
## |AALS-Set35 |NA |0 |4 | 357| 9|
## |AALS-Set35 |NA |0 |5 | 296| 9|
## |AALS-Set35 |NA |0 |6 | 253| 12|
## |AALS-Set35 |NA |0 |7 | 162| 13|
## |AALS-Set35 |NA |0 |8 | 100| 24|
## |AALS-Set41 |NA |0 |1 | 1087| 10|
## |AALS-Set41 |NA |0 |2 | 584| 42|
## |AALS-Set41 |NA |0 |4 | 294| 39|
## |AALS-Set41 |NA |0 |5 | 322| 10|
## |AALS-Set41 |NA |0 |8 | 317| 8|
## |AALS-Set41 |NA |0 |9 | 316| 9|
## |AALS-Set44 |NA |0 |1 | 800| 291|
## |AALS-Set44 |NA |0 |2 | 1836| 117|
## |AALS-Set44 |NA |0 |3 | 1785| 88|
## |AALS-Set44 |NA |0 |4 | 1721| 116|
## |AALS-Set44 |NA |0 |5 | 803| 192|
## |AALS-Set44 |NA |0 |8 | 733| 153|
## |AALS-Set5 |NA |0 |1 | 3975| 272|
## |AALS-Set5 |NA |0 |2 | 4548| 341|
## |AALS-Set5 |NA |0 |3 | 4913| 348|
## |AALS-Set5 |NA |0 |4 | 5204| 249|
## |AALS-Set5 |NA |0 |5 | 4802| 270|
## |AALS-Set5 |NA |0 |7 | 3885| 391|
## |AALS-Set5 |NA |0 |8 | 3545| 499|
## |AALS-Set5 |NA |1 |1 | 4418| 654|
## |AALS-Set5 |NA |1 |2 | 4514| 895|
## |AALS-Set5 |NA |1 |3 | 4492| 1114|
## |AALS-Set5 |NA |1 |4 | 4327| 1023|
## |AALS-Set5 |NA |1 |5 | 4040| 1270|
## |AALS-Set5 |NA |1 |7 | 3311| 1483|
## |AALS-Set5 |NA |1 |8 | 2617| 1903|
## |AALS-Set8 |NA |0 |1 | 4396| 166|
## |AALS-Set8 |NA |0 |2 | 5031| 149|
## |AALS-Set8 |NA |0 |3 | 5879| 140|
## |AALS-Set8 |NA |0 |4 | 6021| 176|
## |AALS-Set8 |NA |0 |5 | 5972| 195|
## |AALS-Set8 |NA |0 |6 | 5856| 221|
## |AALS-Set8 |NA |0 |7 | 5873| 275|
## |AALS-Set8 |NA |0 |8 | 5768| 411|
## |AALS-Set8 |NA |1 |1 | 5451| 106|
## |AALS-Set8 |NA |1 |2 | 6226| 89|
## |AALS-Set8 |NA |1 |3 | 6920| 79|
## |AALS-Set8 |NA |1 |4 | 7180| 100|
## |AALS-Set8 |NA |1 |5 | 7227| 124|
## |AALS-Set8 |NA |1 |6 | 7069| 126|
## |AALS-Set8 |NA |1 |7 | 6657| 179|
## |AALS-Set8 |NA |1 |8 | 6459| 313|
##
##
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |AALS-Set10 | 23366| 874|
## |AALS-Set11 | 15856| 2848|
## |AALS-Set12 | 34242| 5069|
## |AALS-Set13 | 57679| 8650|
## |AALS-Set18 | 77385| 4337|
## |AALS-Set20 | 136053| 21881|
## |AALS-Set21 | 138679| 12905|
## |AALS-Set22 | 115072| 4050|
## |AALS-Set25 | 55817| 3699|
## |AALS-Set26 | 37453| 3126|
## |AALS-Set29 | 7598| 422|
## |AALS-Set33 | 15281| 885|
## |AALS-Set34 | 1876| 112|
## |AALS-Set35 | 2536| 88|
## |AALS-Set41 | 2920| 118|
## |AALS-Set44 | 7678| 957|
## |AALS-Set5 | 58591| 10712|
## |AALS-Set8 | 97985| 2849|
————————————————————————
Odds Ratio Comparing Class:
Odds Ratio Comparing: 0 vs 1 with no drug
[1] “Overall significance (p-value) of association across all time-points = 1.28858611469263e-76”
[1] “Akaike Information Criterion (AIC) = 53715.8633344664”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.8150033 | 0.3874518 | -7.2654292 | 0.0000000 |
| Class1 | -0.2353480 | 0.4967111 | -0.4738126 | 0.6356336 |
| Timepoint2 | -0.1427181 | 0.0332337 | -4.2943786 | 0.0000175 |
| Timepoint3 | -0.0456471 | 0.0329329 | -1.3860640 | 0.1657274 |
| Timepoint4 | -0.0012632 | 0.0327221 | -0.0386054 | 0.9692050 |
| Timepoint5 | 0.1026018 | 0.0316348 | 3.2433231 | 0.0011814 |
| Timepoint6 | 0.3518760 | 0.0322452 | 10.9125071 | 0.0000000 |
| Timepoint7 | 0.5007101 | 0.0309861 | 16.1591656 | 0.0000000 |
| Timepoint8 | 0.6549054 | 0.0296300 | 22.1028116 | 0.0000000 |
| Timepoint9 | 0.6367880 | 0.0325567 | 19.5593637 | 0.0000000 |
| Timepoint11 | 1.0642445 | 0.0371255 | 28.6661614 | 0.0000000 |
| Class1:Timepoint2 | 0.2265677 | 0.0401607 | 5.6415226 | 0.0000000 |
| Class1:Timepoint3 | 0.2741265 | 0.0394968 | 6.9404766 | 0.0000000 |
| Class1:Timepoint4 | 0.3146997 | 0.0391756 | 8.0330474 | 0.0000000 |
| Class1:Timepoint5 | 0.4362322 | 0.0379115 | 11.5065823 | 0.0000000 |
| Class1:Timepoint6 | 0.3687865 | 0.0385520 | 9.5659517 | 0.0000000 |
| Class1:Timepoint7 | 0.4150658 | 0.0369132 | 11.2443654 | 0.0000000 |
| Class1:Timepoint8 | 0.5363158 | 0.0356341 | 15.0506285 | 0.0000000 |
| Class1:Timepoint9 | 0.7033384 | 0.0423324 | 16.6146419 | 0.0000000 |
| Class1:Timepoint11 | 0.3850900 | 0.0490287 | 7.8543729 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.7902958 | 0 | 0.2985250 | 2.092178 | 0.2199447 | 2.839657 | 0.6356336 | 0 | 1 |
| 0.9912582 | 1 | 0.3744212 | 2.624298 | 0.2758595 | 3.561933 | 0.9858973 | 0 | 1 |
| 1.0395403 | 2 | 0.3927099 | 2.751761 | 0.2893458 | 3.734784 | 0.9377660 | 0 | 1 |
| 1.0825850 | 3 | 0.4089899 | 2.865573 | 0.3013452 | 3.889196 | 0.8730569 | 0 | 1 |
| 1.2224833 | 4 | 0.4619338 | 3.235237 | 0.3403756 | 4.390637 | 0.6857948 | 0 | 1 |
| 1.1427510 | 5 | 0.4317788 | 3.024419 | 0.3181497 | 4.104609 | 0.7881454 | 0 | 1 |
| 1.1968797 | 6 | 0.4523370 | 3.166933 | 0.3333222 | 4.297706 | 0.7173486 | 0 | 1 |
| 1.3511659 | 7 | 0.5107247 | 3.574625 | 0.3763655 | 4.850735 | 0.5442935 | 0 | 1 |
| 1.5967821 | 8 | 0.6030522 | 4.228014 | 0.4442855 | 5.738907 | 0.3461946 | 0 | 1 |
| 1.1615345 | 9 | 0.4381543 | 3.079195 | 0.3226806 | 4.181108 | 0.7633820 | 0 | 1 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.157528 | 4.5 | 0.4372627 | 3.064223 | 0.3221674 | 4.158927 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.025232 | 2 | 0.387316 | 2.71381 | 0.2853741 | 3.683241 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.289823 | 7 | 0.4872094 | 3.414637 | 0.3589607 | 4.634613 |
Odds Ratio Comparing: 1 vs 0 with no drug
[1] “Overall significance (p-value) of association across all time-points = 1.28858175993879e-76”
[1] “Akaike Information Criterion (AIC) = 53715.8633275649”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.0501178 | 0.3892820 | -7.8352407 | 0.0000000 |
| Class0 | 0.2348636 | 0.4980929 | 0.4715256 | 0.6372655 |
| Timepoint2 | 0.0838848 | 0.0225517 | 3.7196647 | 0.0001995 |
| Timepoint3 | 0.2285051 | 0.0218076 | 10.4782547 | 0.0000000 |
| Timepoint4 | 0.3134792 | 0.0215439 | 14.5507375 | 0.0000000 |
| Timepoint5 | 0.5388628 | 0.0208969 | 25.7867393 | 0.0000000 |
| Timepoint6 | 0.7206924 | 0.0211371 | 34.0960546 | 0.0000000 |
| Timepoint7 | 0.9158273 | 0.0200643 | 45.6447065 | 0.0000000 |
| Timepoint8 | 1.1912670 | 0.0197994 | 60.1667714 | 0.0000000 |
| Timepoint9 | 1.3401838 | 0.0270761 | 49.4969756 | 0.0000000 |
| Timepoint11 | 1.4493524 | 0.0320741 | 45.1875864 | 0.0000000 |
| Class0:Timepoint2 | -0.2267270 | 0.0401655 | -5.6448233 | 0.0000000 |
| Class0:Timepoint3 | -0.2742090 | 0.0395008 | -6.9418578 | 0.0000000 |
| Class0:Timepoint4 | -0.3148614 | 0.0391794 | -8.0363946 | 0.0000000 |
| Class0:Timepoint5 | -0.4363329 | 0.0379154 | -11.5080601 | 0.0000000 |
| Class0:Timepoint6 | -0.3688850 | 0.0385563 | -9.5674304 | 0.0000000 |
| Class0:Timepoint7 | -0.4152512 | 0.0369167 | -11.2483402 | 0.0000000 |
| Class0:Timepoint8 | -0.5364623 | 0.0356383 | -15.0529898 | 0.0000000 |
| Class0:Timepoint9 | -0.7034846 | 0.0423370 | -16.6162962 | 0.0000000 |
| Class0:Timepoint11 | -0.3852204 | 0.0490325 | -7.8564340 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 1.2647362 | 0 | 0.4764471 | 3.357262 | 0.3507345 | 4.560594 | 0.6372655 | 1 | 0 |
| 1.0081698 | 1 | 0.3797872 | 2.676252 | 0.2795771 | 3.635513 | 0.9869670 | 1 | 0 |
| 0.9614185 | 2 | 0.3622218 | 2.551822 | 0.2666572 | 3.466344 | 0.9370317 | 1 | 0 |
| 0.9231183 | 3 | 0.3478066 | 2.450061 | 0.2560485 | 3.328070 | 0.8723823 | 1 | 0 |
| 0.8175287 | 4 | 0.3080839 | 2.169386 | 0.2268195 | 2.946630 | 0.6857526 | 1 | 0 |
| 0.8745713 | 5 | 0.3295587 | 2.320907 | 0.2426247 | 3.152502 | 0.7878165 | 1 | 0 |
| 0.8349465 | 6 | 0.3147005 | 2.215235 | 0.2317029 | 3.008748 | 0.7170919 | 1 | 0 |
| 0.7396348 | 7 | 0.2788202 | 1.962052 | 0.2052956 | 2.664741 | 0.5445648 | 1 | 0 |
| 0.6258647 | 8 | 0.2357330 | 1.661654 | 0.1735244 | 2.257357 | 0.3468768 | 1 | 0 |
| 0.8604009 | 9 | 0.3236852 | 2.287067 | 0.2381775 | 3.108143 | 0.7630762 | 1 | 0 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.891039 | 4.5 | 0.3356844 | 2.36517 | 0.2471162 | 3.212864 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.9949943 | 2 | 0.3748693 | 2.640957 | 0.2759674 | 3.58743 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.7870836 | 7 | 0.2964995 | 2.089383 | 0.218265 | 2.838298 |
[1] TRUE TRUE
Odds Ratio Combined
Reference condition: 0
Odds Ratio Combined
Reference condition: 1
] NULL
[[2]] NULL